barSeed - Barley Seed Development Database

Probe CUST_23907_PI390587928

Source Contig U35_19795

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23907_PI390587928	Hv_44K_v2	GTAGGGATGGGATCTGTATGTACATAGAAAAGAATGCTGCAAGGAATACTAGTGAAAAGG	1524	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.247	0.220	1.651	2.090	0.867	1.044
Raw	3.055	4.257	47.412	89.992	13.613	17.678

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5926.5	2162	7e-23	2027 - 2083	100	57 / 57	plus	ABC11470
MLOC	MLOC_5926.4	2508	7e-23	2373 - 2429	100	57 / 57	plus	ABC11470
MLOC	MLOC_5926.3	2796	7e-23	2697 - 2753	100	57 / 57	plus	ABC11470
JLOC1	JLOC1_3843.1	3007	4e-23	2689 - 2745	100	57 / 57	plus
Harvest21	ABC50098	627	3e-25	16 - 75	100	60 / 60	minus
Harvest35	U35_19795	1599	3e-25	1525 - 1584	100	60 / 60	plus

Contig Sequence (1599 bp)

>U35_19795 1599 Hv_44K_v2
GGATCTCTTTGAGCGCATCTGGTCCGTCGATCGGTTAGAGCGTCTTGGAATCTCGCGCTA
TTTCAAGCAAGAAATCAAGCAGTGCTTGGATTATGTTCACAGGCACTGGACTGATGAGGG
GATTTGCTGGGCGAGGAACTCCACTGTAATAGACGTGGATGATACATCCATGGCATTCCG
GCTGCTGCGGCTTCATGGATACGATGTCTCCCCAAGTGTATTTGGGAAGTTTGAGAAGGA
CGGGGAGTTCTTCTGTTTCGTGGGGCAATCAACACAAGCAGTCACTGGGATGTACAACCT
GAACAGGGCCTCTCAGGTAAGGTTCCCTGGAGAGGACTTGTTGCAGCGTGCAGGGAGATT
CTCGTATGAGTTCCTTAGAGAAAGGGAAGCCCATGGCACGATTCGAGACAAATGGATCAT
TGCTAAGGATCTACCAGGCGAGGTAAAATATACACTGGACTTCCCATGGTATGCAAGCTT
ACCGCGTGTAGAAGCAAGAGTCTACCTAGATCAATATGGCGGTGATAATGATGTCTGGAT
TGGGAAGACACTCTACAGGATGCTACTTGTGAACAACAACACCTATCTTGAGTTGGCAAA
GCGTGATTTCAATCGCTGCCAAGTCCAACATCAGCTTGAGTGGCATGGCCTGCAAAAGTG
GTTTATTGAGAATGGCCTCGAGACTTTTGGGGTGACTTTAAGAGATGTTTTGAGAGTTTA
TTTTCTAGCTGCCGCTTGCATTTTCGAGCCAAGCCGTGCCACCGAGCGACTTGCATGGGC
CAAGGTGTCAGTGCTGGCCAACATTATTACTAAAAACCTTCATAGCGATTTGTCGGGTAA
TGAAATGATGGAACGGTTTATGCATGGCGGTATCTACGAAGGAAATAGTAATATATCTTG
GCGTAAAGGAGATGCAAAAGAGGACAGTCTTGTGGGGGCACTTGAGCAGCTTATTGATTT
GTTGGCACAAGAGGCACTACTTGTTGGTGAAGAACCAATGTACATCAACAATTTGTTACG
CCGCGCTTGGATCGAATGGATGATGCAACTGATAAATAGAGAAGATGACACGTACGATTC
AAGTGTTATTCAAGCAGGGTCATGCATGGTTCACGATAAACAAACATGTTTGCTCCTAGT
AAAAATTATTGAGATTTGTGGTGGACGAACCGGTGAAGCATCATCGATGATAAACACCAT
TGGTGGTGCTTGCTTTATTCAACTTGCGTCCTTTATTTGTGACAACCTTCACCACAAGAT
GTTACTTTCTCAGGACACCGAAAAGGATGAGGCGGCGATGAGCCGCATGGAAGAGAAAAT
CGAGGCGAGCATGCAGGAACTCACCCAGAACTTTCTCCGGACTCATGATGATGGGACGAG
CAGCGAGACGAAGCAGACCTTGATGAGCGTCGTGAGAAGCAGTTACTTTGCTGCGTACTG
CCCTCCCCACATATTCGATAGACATGTCTCGAAGGTTATTTTTGAACATGTGTTTTGAAA
GAAAAAAGAAATTACCGTGCAGTGGTAGGGATGGGATCTGTATGTACATAGAAAAGAATG
CTGCAAGGAATACTAGTGAAAAGGAAGGACNNCTATAAG

Homology of Contig U35_19795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17780.1	868	0.0	protein\|ent-kaurene synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	AT4G02780.1	802	3e-131	\| Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 \| Terpenoid cyclases/Protein prenyltransferases superfamily protein \| chr4:1237881-1244766 REVERSE LENGTH=802