barSeed - Barley Seed Development Database

Probe ABC11434

Source Contig ABC11434

barSeed

Links

Affymetrix Source Sequence (802 bp)

>ABC11434 802
GGGCAGACACAATTGACACTCAACAGCTTATGAGAGTGTATGGTGCACTTATGTGGTCTC
TTGGTAACAGTACTGAACACCCCTGAGGTGTCACGCGTTTATATTGGATCATTCAATGAT
AAACCAGTGAAGGAATCAGCTGTTGGCCCGATTGGAAAGGAACTATTTGAGAAAGAGCAG
GATGATCTCCTTTCTGATCTAAAAGATATACCAAAGAAAGCTTGTGATCGCAGGATCAAT
GAATTCGTCAAACGTGCTAGAGCTGCCAAGATACATGCTTATATAATTGGGCATCTAAAG
AATCAAATGCCTTCGATGATGGGGAAAGCTAAAGCCCAACAGAAACTCATAGACAATTTG
GAGGACGAGTTTGCAAAGGTACAAAGGGAACATCATCTCCCCGCAGGAGATTTCCCTTAC
GTGGAGCACTTCAGAGAAGCATTGGGCGGGTACAGCATCGACAAGTTCGAGAAGGTGAAG
CCCAAGATGATCCAGGCGGTGGACGACATGCTCGGCTACGACATCCCGGAGCTGCTCAAG
AACTTCAGGAACCCTTACGAGTGAGCAGACATCATGATTGGAAGACCGGCTTCGGTATGT
CAGGCGCGGATGTCGGTGGCTGCCCATAGAGTCGCGGCTGCCAGTCTAGTAGGGTGTTTG
TACCCATTGTTGTGTAACTGTATGAATAAGAGCCAGAAGCAATGGCTCAATTGCCGGCTG
GAGAACGCCCTTATTGTAATGGCATGGAGAGAATCGGAATATGGGATGGATCATGGATGG
TGTGGTGGTCGCGTTGATCCTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364678	2066	0.0	1243 - 2042	99	797 / 801	None	ABC08285 ABC11433 ABC11434
MLOC_39579.1	541	0.0	5 - 541	99	534 / 537	None	ABC11433 ABC11434
MLOC_73208.5	1697	2e-140	884 - 1445	83	472 / 569	None	ABC11434 ABC47547
MLOC_73208.3	2135	2e-140	1257 - 1818	83	472 / 569	CUST_32174_PI390587928	ABC11434 ABC47547
MLOC_73208.7	1249	3e-113	77 - 526	83	377 / 453	CUST_32174_PI390587928	ABC11434 ABC47547
MLOC_44751.2	1404	4e-112	5 - 236	98	229 / 233	None	ABC08285 ABC11434
MLOC_44751.1	1343	4e-112	19 - 250	98	229 / 233	None	ABC08285 ABC11434
MLOC_73208.2	1916	7e-75	1590 - 1916	82	273 / 331	None	ABC11434 ABC47547
MLOC_44751.3	1351	1e-72	1 - 155	99	154 / 156	None	ABC08285 ABC11434