barSeed - Barley Seed Development Database

Probe CUST_32174_PI390587928

Source Contig U35_23453

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32174_PI390587928	Hv_44K_v2	CACTGTTCGGAATAGATGCTTGGTTGGAGAATTCAGGATGCATGGACAGCATAGTAGAAA	747	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.457	1.652	1.184	0.772	0.303	0.344
Raw	7336.700	12433.943	8136.203	8245.820	1153.149	1408.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73208.8	821	6e-24	749 - 807	100	59 / 59	plus	ABC47547
MLOC	MLOC_73208.7	1249	6e-24	736 - 794	100	59 / 59	plus	ABC11434 ABC47547
MLOC	MLOC_73208.3	2135	6e-24	2028 - 2086	100	59 / 59	plus	ABC11434 ABC47547
JLOC1	JLOC1_48731.1	2238	3e-24	2105 - 2163	100	59 / 59	plus
Harvest21	ABC47547	507	3e-25	15 - 74	100	60 / 60	minus	ABC47547
Harvest35	U35_23453	821	3e-25	748 - 807	100	60 / 60	plus

Contig Sequence (821 bp)

>U35_23453 821 Hv_44K_v2
GCTTATGAGAGTGTACGGTGCACTGATGTGGTCCCTTGGGAAAGTTCTAAATACTCCTGA
GGTTATGCGTGTCTACATTGGGTCGTTTAATGACAAACCTGTGAATGAATCAGCTGTTGG
ACCAATTGGAAAGGAATTGTTTGAGAAAGAGCAAGAGGATCTCCTTGCTGACCTGAAAGA
CATACCTAAGAAGGCTTGTGATCGTCGGGTCAATGAGTTTGTCAAGCGTGCCAGAGCTGC
AAAGATCCATGCTTACATAATTGGCCAGCTGAAGAAGGAGATGCCTGCAATGATTGGGAA
AGCCAAGGCTCAACAGCGACTCATCGACAACTTGCAAGATGAGTTTGCAAAGGTCCAGAG
GGAGTACCACCTTCCGGCGGGCGACTTCCCCGACGTGGAGCACTTCAAGCAGGTGCTGGC
CGGGTACAGCATCGACAAGTTCGAGAAGATAAAGCCCAAGATGGTGCAGGCCGTGGATGA
CATGCTCGCGCACGACATCCCGGACCTCCTCAAGAACTTCAGCAACCCTTACCAGTGAAC
CTGTTGCTGACCTCTCGTCAGTGGCAACTCGTTCCTCAAGTGCTGTTCGGCTGCCATGAC
TCATGATGGAAGTAGGCAAGCGTGAGAGGGTCATGCCGGCCCTTGTGTGTGGGAATAGTG
AGAAACGTGTAACACAATGTTCAGAGATGCATTGGCATTTTCGTTTTGTCTTCAGTGCTG
CACTGCCGTGGCCTATGCATGTTTGACCACTGTTCGGAATAGATGCTTGGTTGGAGAATT
CAGGATGCATGGACAGCATAGTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_23453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g06340.1	544	2e-110	protein\|EH domain-containing protein 1, putative, expressed
Brachypodium v1_2	Bradi3g04420.1	546	7e-114
Arabidopsis v10	AT3G20290.1	545	4e-103	\| Symbols: ATEHD1, EHD1 \| EPS15 homology domain 1 \| chr3:7075057-7078655 REVERSE LENGTH=545