barSeed - Barley Seed Development Database

Probe ABC11274

Source Contig ABC11274

barSeed

Links

Affymetrix Source Sequence (1254 bp)

>ABC11274 1254
GGAAATGGTTAGATGGCTTAAAGAACATAATAACATAAACATCTTTGTAGAGCCACGAGT
TAGCAAGGAATTACTGATTGAAGATTCTTACTTCAACTTTATTCAGACATGGGATAATGA
TCAGGAAATGAAGACATTACACACGAAGGTTGACCTCATTGTAACTCTCGGCGGTGATGG
AACTGTTCTGTGGGCTGCATCATTGTTCAAAGGACCAGTTCCCCCAGTGGTTGCATTCTC
TCTTGGATCATTGGGCTTCATGACTCCCTTCCCAAGTGAGCAGTATCGTGAATGCTTGGG
CAATGTGCTGAAAAGACCATTTACCATCACACTGAGGAGCCGCCTGCAGTGTCATGTAAT
TCGTGATGCAGCTAAGGATGAAGTTGAGACCGGGGAACCGATTCTAGTGCTTAATGAAGT
TACAATTGACCGCGGGATGTCATCGTACCTTACCTACTTAGAATGCTATTGTGATAGTTC
TTTTGTTACATGCGTACAAGGAGATGGGCTAATACTATCAACAACATCTGGAAGCACAGC
GTATTCACTGGCAGCTGGAGGATCAATGGTACATCCACAGGTCCCGGGGATCCTTTTCAC
ACCGATCTGCCCTCACTCATTGTCATTCCGGCCTTTGATACTGCCGGAATACGTGACTTT
GCGCGTGCAAGTACCGTTCAACAGCAGAGGGCAAGCCTGGGCGTCCTTCGACGGCAAGGG
TAGGATTCAGCTAGGACCAGGCGACGCCCTCATCTGCAGTGTCTCTCCTTGGCCCGTGCC
CACGGCATGCCTGGTGGACTCGACAACCGACTTCCTGCGAAGCATCCACGAGGGCCTCCA
CTGGAACCTCAGGAAGAGCCAGGCTCTGGATGGTCCTGCCTGATCGATGAAGTTTGCGTG
TCATTGGAACTCGAGATGGCGGATGAGTCGGTAGATGCGATATTTCAGAGCATCTCCTCA
CAGCCCAGCGAAAATGAAGTGGATATGCATCATGCATGCTCCTGTGTTGGTTCGGTTCTT
TATGGGTCTTTGAATATTCTTCTACTATTCCGTACGCATAAAAGGGTTTATTGATATGTT
TATTAGGTGTCGGCTCGTGGAATTCGAACTTGGTCAGTTTGCCACCATGTGAATATCTAG
AGTTTTATTGAGTATAGGCAGTATAATTATGTAAGAGTCGCAGCTACCATGTGACACATG
TATCCAAAAAAAATCAAAAAAAAAAAGTAAGAGTCGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366818	2066	6e-97	820 - 1012	100	193 / 193	CUST_21484_PI390587928 CUST_40060_PI390587928	ABC11274
MLOC_66022.1	972	0.0	162 - 820	99	656 / 661	CUST_21484_PI390587928	ABC11274
MLOC_40404.1	545	0.0	29 - 418	100	390 / 390	None	ABC11274
AK367623	2353	0.0	1082 - 1934	80	687 / 856	CUST_1997_PI390587928 CUST_40197_PI390587928	ABC11274 ABC12751
MLOC_52165.1	2131	0.0	879 - 1731	80	686 / 856	CUST_1997_PI390587928 CUST_40197_PI390587928	ABC11274 ABC12751
MLOC_58333.3	1792	6e-97	721 - 913	100	193 / 193	CUST_40060_PI390587928	ABC11274
MLOC_58333.1	1135	2e-96	65 - 256	100	192 / 192	CUST_40060_PI390587928	ABC11274
MLOC_58333.2	1057	4e-94	33 - 220	100	188 / 188	CUST_40060_PI390587928	ABC11274
MLOC_58333.4	985	1e-74	1 - 166	97	166 / 171	CUST_40060_PI390587928	ABC11274
MLOC_58333.5	1109	3e-55	137 - 254	100	118 / 118	CUST_40060_PI390587928	ABC11274