- Probe CUST_40060_PI390587928
- Source Contig U35_10247
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_40060_PI390587928 | Hv_44K_v2 | CCTTCGAAAAGGGGATATAACAACAGCAGAACGCAGCAATAAACAGATTTTTCTGAAATG | 628 | GeneList: darkorange MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.817 | 0.991 | 1.944 | 1.502 | 1.064 | 0.845 |
Raw | 20.873 | 34.843 | 66.750 | 78.560 | 20.457 | 17.622 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK366818 | 2066 | 7e-23 | 689 - 749 | 98 | 60 / 61 | plus | ABC11274 |
MLOC | MLOC_58333.2 | 1057 | 7e-23 | 291 - 351 | 98 | 60 / 61 | minus | ABC11274 |
MLOC | MLOC_58333.4 | 985 | 7e-23 | 237 - 297 | 98 | 60 / 61 | minus | ABC11274 |
MLOC | MLOC_58333.5 | 1109 | 7e-23 | 325 - 385 | 98 | 60 / 61 | minus | ABC11274 |
MLOC | MLOC_58333.3 | 1792 | 7e-23 | 984 - 1044 | 98 | 60 / 61 | minus | ABC11274 |
MLOC | MLOC_58333.1 | 1135 | 7e-23 | 327 - 387 | 98 | 60 / 61 | minus | ABC11274 |
JLOC1 | JLOC1_37888.3 | 1257 | 4e-23 | 710 - 770 | 98 | 60 / 61 | plus | |
JLOC1 | JLOC1_37888.2 | 1973 | 4e-23 | 705 - 765 | 98 | 60 / 61 | plus | |
JLOC1 | JLOC1_37888.1 | 1968 | 4e-23 | 705 - 765 | 98 | 60 / 61 | plus | |
Harvest21 | ABC20668 | 691 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
Harvest35 | U35_10247 | 691 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus |
Contig Sequence (691 bp)
>U35_10247 691 Hv_44K_v2 CACCTGAACGGCCCTATCGGCGAAGAGGGGAACGCCGGGAAGCAGTCGGATCGCGCAGCC ATGTCCGCGGACGAGGCCGCACTCAAGGCCTGTCATGAGAGAATAAACCTTAGTGTAGCT GCCTCGCATCAAGCTGAGAATGGGTCTCTCACCACAGTTAGTTCTAAGAAATCAGAGGAG GCGGCCTATGCATTTCTTCCTCCTATCGAGTCAACTGACGCGCACCTTCATGAGTTTGCA GAGGCCATGAGAACTGTTGCAAAAGCACTGCGACAAGTTGCGGAAGGGAAAGCTGCTGCT CAAGCAGAGGCGGCTGAGTGGAAGCGCAAGTATGAGTCAGAGAAGGCAGTCAAGGCACAC ATGCAGCACAGTGTAATTAAAGGCTGCAGCAACTGTGTCAAGGATAAGCTAGAGCATTTG GCTAGTAAACTGACACTGGAGACTTCCTCGGCTGATGAAACAGGCTGCTGCGGAAACCAT GGGATCTGCTCACGTCAAATTCTCCAGGATCAGTGTCCTGGACCTAACCGTAAATCAGAT GACAGGATTATTGGAAGAAAGGTACCGTTTAGACTTTCGTGGGGTAGCAATGGTGATAAG AATGGTCAGCACAAGCATGATTNTGTGTCCTTCGAAAAGGGGATATAACAACAGCAGAAC GCAGCAATAAACAGATTTTTCTGAAATGGGA
Homology of Contig U35_10247 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os05g32210.1 | 495 | 6e-69 | protein|NAD kinase, putative, expressed |
Brachypodium v1_2 | Bradi2g26930.1 | 549 | 1e-103 | |
Arabidopsis v10 | None |