barSeed - Barley Seed Development Database

Probe ABC10920

Source Contig ABC10920

barSeed

Links

Affymetrix Source Sequence (1947 bp)

>ABC10920 1947
CGACTTGGTTATGTTGGCGTCGTAAACCGCAGCCAGCAGGATATCAATTCAGATGTCAGT
GTCAAGCAGGCTCTGATCCGAGAAGAAAGTTTCTTCCGTACTCATTCGGCATACAATGGT
CTTGCTAAGCACTGTGGGATACCACAGTTAGCAAAGAAGCTAAACCAGATCTTGGTCCAA
CATATAAGAACTATTCTGCCTGGACTGAAGGCACGCATAAGTTCTCAATTGACAGCCATT
GCTAAGGAGCATGCCTTTTATGGTGACCCAGTCGAGTCCAAGGCTGGGCAAGGTGCTAAG
CTTTTGAACATTCTAGCTAAATATTGTGATGCTTTCTCGTCTATGGTAGAAGGAAAAAAT
GAAGATATATCAACAATCGAGCTTTCTGGTGGAGCAAGAATTCACTATATTTTTCAATCA
ATCTTTGTCAAAAGCTTAGAGGGTGTTGACCCTTGCGAGGATGTCACTGATGAAGATATC
CGCATGGCTATACAGAATGCAACTGGTCCTAGGAGTGCTTTGTTCGTACCGGAGGTGCCA
TTTGAAGTCCTTGTGCGCAGGCAAATCAGCAGATTGCTTGATCCAAGTCTTCAGTGTGCA
GATTTCATATACGAGGAGCTGGTTAAGATGAGCCACCGTTGCCTTTGCAATGAGCTGCAG
CAGTTTCCTATACTCAGAAGGAGCATGGATGAAGTAATTGGGAAGTTTCTACGGGATGGG
CTTAAGCCAGCACAAGATATGATAGCACACATAATTGAGATGGAGGCCGATTACATAAAT
ACATCTCACCCAAGTTTCATCGGTGGCAGCAAGGCTGTAGAGCAAGCACAGCAACAAGTT
AGAGCAGCTAGATTGCCTGCAACAGTGGTTAGAAGGGATGGAGTAGATGCAGATAGGCCA
CAGGCTTCTGAAAAAACCCAAAAAGCACGTGCATTATTGGGTAGAACTACTGGTGTAAAT
GGAGTTATCACCGACCAGATCCAGGGGGTACGATCGGCTGCTGAGGCAGAGAGACCAGGA
TCTTCAGGTAGTGGAAGCACTTCGTTTTGGGGCTCAATATTCACCTCAAGCGAAGACCGT
GCACCTTCTTCAGCAAGAGGTAGCTCAACGAACAAATCTTATGCTTCAGCTACTCCCAAC
CTGGAACATTCATTCTCTTCAATACAGTTAAAAGAGCCACCGCTAGTCCTCAAGCCTTCA
GAAAATCATTCTGAGCAGGAGGATCTTGAAATAGCAATCACAAAATTGCTGCTGCAGTCA
TATTACAATATAGTAAGGAAAAATGTCGAGGATTTTGTACCAAAAGCAATTATGCATTTT
CTGGTTAATCACACTAAAAGGGAGCTGCATAATTTCCTCATAACTACCCTTTATAGAGAG
GAGCTCTTTGGGGACATTCTCAGAGAACCTGATGAAATAACTACAAAGAGGAGGCAGATA
CGTGATACCCTTAAGGTCCTTCAGCAAGCCTACAAAACTTTGGACGAGATACCGCTTGAA
GCGGAGACAGTGGAGAGAGGCTATTCCCTGGATTCTGATGCGACGGGTCTACCACGTGTC
CATGGGGTTTACGATGGAAGCTCACCATATTCGACCCCGAAGCAACCAAGGCCTAGGAAA
TCAAGCCACTCCGGGGAGCAGCAACAACCTTTCAGTGGCAATGGATTCTGATATTGCCTT
TCACGATCATCCCCTGGATTAGTAGTGATTTGAGCCAGCGGATGTGCTGGTAGCAACACA
TGATTCCGCCTTGGGTTTGTCAGTTCGGTACCCAATAGATATATGTTTTTTTTCTCTAGC
CATTGCTATTCTTTTTAGTGTTGCGCCCAACGAAAGCATTGGCGTGGTGCCAAATTTTTG
CCATGTTGCCCTCCTGTACAGTATATCACTGCCCAATCATTTCGACTTAAAATGAAACGC
GGTGATGGGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK368050	2822	0.0	910 - 2822	99	1890 / 1914	CUST_40416_PI390587928 CUST_17402_PI390587928	ABC10920 ABC40367
MLOC_19304.1	1514	0.0	145 - 1311	99	1163 / 1168	CUST_17402_PI390587928	ABC10920 ABC40367
MLOC_19304.2	1517	0.0	145 - 1314	99	1163 / 1171	CUST_17402_PI390587928	ABC10920 ABC40367
MLOC_19304.3	1486	7e-113	1087 - 1308	100	222 / 222	CUST_17402_PI390587928	ABC10920 ABC40367
MLOC_74756.3	670	0.0	1 - 668	100	668 / 668	None	ABC10920
MLOC_19304.4	929	0.0	130 - 694	99	562 / 565	None	ABC10920
MLOC_74756.2	426	0.0	1 - 425	100	425 / 425	None	ABC10920
MLOC_74756.1	425	0.0	1 - 424	100	424 / 424	None	ABC10920
AK372371	2937	8e-63	1001 - 1599	74	452 / 608	CUST_21643_PI390587928 CUST_16266_PI390587928	ABC10920 ABC14605