barSeed - Barley Seed Development Database

Probe CUST_16266_PI390587928

Source Contig U35_20611

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16266_PI390587928	Hv_44K_v2	AGTCTTATTAAAAGGCGTAATGTGTGTCGGCAGCATCCACTGCTTGAACTTTATGGGATC	1047	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.187	1.481	1.155	0.826	0.325	0.350
Raw	480.786	920.249	637.583	709.415	98.140	116.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372371	2937	2e-24	2855 - 2914	100	60 / 60	plus	ABC10920 ABC14605
JLOC1	JLOC1_14216.1	1311	8e-25	1244 - 1303	100	60 / 60	plus
Harvest21	ABC14605	1107	3e-25	1048 - 1107	100	60 / 60	plus	ABC14605
Harvest35	U35_20611	1107	3e-25	1048 - 1107	100	60 / 60	plus

Contig Sequence (1107 bp)

>U35_20611 1107 Hv_44K_v2
GATACTGATGCAGGAACAAGTGTGGCAGGTGGAGGCCAGAATGGTCACTCACTTGTTGGT
GGGAGTTTGTCAAGCATGTCAGATCCACGAGGTTACAGCCTCAATAGCTTATATTCTATG
ATTCGGTTAAGAGAGCCACCCAGCACCTTGAAACCATCAGAAAACAAGACTGACCGAGAC
AGAACAGAGATAGCTATTGTGAAACTTTTGGTCAAATCTTACTATGACATTGTCAGAAAG
AGTATTGAGGATGCGGTTCCCAAAGCTATAATGCATTTTTTGGTGAACCACACAAAGCGG
GAGCTCCACAACGTTCTAATTCGGAAACTGTACAGGGAGAGCCTGCTTGATGACATGCTG
AGGGAAACAGATGAAGTACTTATCAGACGGCAGCGTATTCAAGAAACGCTCCAAGTTCTT
GAACAGGCACACAGGACGCTCGAGGAATTTCCCCTTGAAGCTGAGAAGCTTGAGAGGGGC
TACAGCCTCTCTGAGTATGGCACTGGCCTGCCGAAAATCCCTGGACTCAGCAATCGCAAT
CCTAGGGGTATTCTCCCTTAACTTGTACAGTTGAAAGAAGCATCAGATGTACATGAACAT
TCTCATGTGGCATGTTGGTCGGACCCAGGTGCCGAAAAAGGGCACCTCTTCACTTGGTTT
TGATCAAATCCTCAATCATTTTCGAGCTATTTGTTTGAGTTTTGAGCTGGGCATCCAAAT
TTTGTTCTACAAAGGCATTTCTTTGTAATCAGAAGCTGTGGCTGGAACAACACCGGGAGT
AGATCAGTATGTAAGTTACCCCCCTTGTTAACCTGACAACGGGACCACCTGCACTTATAT
TATCATGCAAGGCTACAATTGCGATTTTACAGGAGCATCTAAACAAAATTTGTAGTTATA
AACACATGTCAAGCAATTTCTTTTGAAAGCCCCTCCATATAGTTGGTAAGCTTCAAATCT
GGTGTTGAGCTACGCATCATGTACTGTACTAATCATGATGCTCTTAGCAAGGTATCAGTT
CTGTCAACCCGTGCTAGTTTTTTTTTCAGTCTTATTAAAAGGCGTAATGTGTGTCGGCAG
CATCCACTGCTTGAACTTTATGGGATC

Homology of Contig U35_20611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31190.1	798	2e-87	protein\|dynamin family protein, putative, expressed
Brachypodium v1_2	Bradi5g07690.1	773	3e-102
Arabidopsis v10	None