barSeed - Barley Seed Development Database

Probe ABC10826

Source Contig ABC10826

barSeed

Links

Affymetrix Source Sequence (1058 bp)

>ABC10826 1058
GCGGCGCGGTGGCATCGTGGGGCGGCATTCCGGCGAGGCAGGGACAACCATGGGGCTCGA
CTCGCCCTCCGGCTCTGGCTCCGGCACCGCTCCAGGGCGCGGAGCGGGGCCGAGGAGAGG
CCCGCCTTCGGGGACCGCACCAGCTCTGGCTTCGCGTCCAGGGAGCGGCGGAGCGGCGGC
GAGAGCGGGCTCGGGGAGAGGCCCTTCTTCGGGGACCGCACCAGCTCCGAGCGGAGGCAG
CCCGGCCAGGAGTTCTATAAGGATATCTTCCCGGGGGCGAGCCCACGTCGCCCGGCGGGT
CCACCAGCCGCCTGTTGTCGCGGTCCAGCTTCTCCATGAAGTTCACCAGAGTTCTTTTGC
ACAGGGGGTATCCCAGCAAGATTCGAAGAAGAATCCCTTTTTGTGGCATCGATATCCCTT
CCTATCCCGGTTCCGTTCAAGTGGAGATAAGAAGGAGAAAGACACTTCTCAACGTGTTAA
CTCTATGGACAGTGAATGTGAAGGGACTCCTATTAGCTCAGCAAGCTTCATCAGCAGCGA
CAAGTTCCATTTTTCATTCTATAAGTGGGCAGGGCAAGACAAAGAAGGAGCACGGCGGCA
AGGTGATTTGAGGCTCATGGTGGACCGGATCAAGCAAGGGGAAGGTCAGATTCGTCGGCT
GACGGCGTCGGCAAGGGGTTCAATGGCGGCCAGAGGATATGATTATGATGATGATGCATA
CTGCTCCTCTGGAGTCTACGTCTCTTTGGATTCTTGGACACTTATAGCCAATGAGACTAC
ATTTTCGGTTGTTAGCTGGAGCTATCACTATGACTGGAAATTTATTTCCGCTCAAGTAAA
TTTATATGCTCACTGAAAACCAACGACAGTCAACACTTATCAGCAGTTTGCAATTTGTAT
TAGAATGTGCCTAAGCCAATGGTCAGACAATCTTGGTCATGATTTATGTAGATTGGATAG
TTCCTTCAAACTGCGCTCTTCAATCTTGAGTGGACAATTATATGTTTCCCTTATAGAAAA
ATTTACATATATGTTTGCATAAAAAAAATAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK357484	1135	2e-140	45 - 373	94	310 / 329	CUST_10580_PI390587928	ABC10826 ABC14412
AK376808	1448	0.0	370 - 720	100	351 / 351	None	ABC10826 ABC14412
MLOC_34036.4	457	0.0	52 - 457	100	406 / 406	None	ABC10826 ABC14412
MLOC_2802.3	881	0.0	3 - 426	96	407 / 424	None	ABC10826 ABC14412
MLOC_34036.1	732	0.0	105 - 451	100	347 / 347	None	ABC10826 ABC14412
MLOC_34036.3	489	0.0	52 - 398	100	347 / 347	None	ABC10826 ABC14412
MLOC_34036.2	583	0.0	69 - 415	100	347 / 347	None	ABC10826 ABC14412
MLOC_34036.5	408	8e-180	1 - 342	100	342 / 342	None	ABC10826 ABC14412
MLOC_48121.1	709	2e-176	176 - 521	99	346 / 350	CUST_10580_PI390587928	ABC10826
MLOC_2802.2	990	3e-159	192 - 538	96	333 / 347	None	ABC10826 ABC14412
MLOC_2802.1	912	3e-159	114 - 460	96	333 / 347	None	ABC10826 ABC14412
MLOC_55435.5	1586	1e-143	6 - 303	98	291 / 298	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_80418.1	845	2e-140	257 - 585	94	310 / 329	None	ABC10826
MLOC_80418.2	661	2e-140	73 - 401	94	310 / 329	None	ABC10826
AK361010	2232	3e-99	139 - 389	93	234 / 251	CUST_4194_PI390587928 CUST_24452_PI390587928	ABC10826 ABC14412 ABC14413
AK364448	2188	3e-99	142 - 392	93	234 / 251	CUST_4194_PI390587928 CUST_24452_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_55435.8	1659	1e-108	144 - 372	98	224 / 229	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_55435.6	1607	1e-108	105 - 333	98	224 / 229	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_55435.3	1814	1e-108	259 - 487	98	224 / 229	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_55435.4	1813	1e-108	235 - 463	98	224 / 229	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_55435.7	1701	1e-108	104 - 332	98	224 / 229	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_55435.1	1885	1e-108	283 - 511	98	224 / 229	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_55435.2	1906	1e-108	283 - 511	98	224 / 229	CUST_4194_PI390587928	ABC10826 ABC14412 ABC14413
MLOC_47608.2	1387	5e-102	1162 - 1387	96	218 / 226	CUST_10581_PI390587928	ABC10826
MLOC_47608.3	266	2e-101	42 - 266	96	217 / 225	None	ABC10826
MLOC_47608.1	883	7e-101	660 - 883	96	216 / 224	CUST_10581_PI390587928	ABC10826
AK376318	735	3e-99	257 - 507	93	234 / 251	None	ABC10826
MLOC_27833.1	219	1e-93	2 - 219	95	208 / 218	None	ABC10826
MLOC_39882.1	572	1e-87	397 - 572	100	176 / 176	None	ABC10826
MLOC_2804.1	350	7e-76	1 - 183	95	177 / 187	None	ABC10826