barSeed - Barley Seed Development Database

Probe CUST_24452_PI390587928

Source Contig U35_6177

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24452_PI390587928	Hv_44K_v2	CGGCCATTGCTCCCCTTTGCTAAACGAAAAGAAAGATTTTAGCAATTAAAGTATTAAACT	1400	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.563	2.176	1.389	0.740	0.286	0.273
Raw	757.203	1594.454	892.276	765.733	102.434	105.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361010	2232	2e-24	2103 - 2162	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	AK364448	2188	2e-24	2127 - 2186	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
Harvest35	U35_6177	1527	3e-25	1401 - 1460	100	60 / 60	plus

Contig Sequence (1527 bp)

>U35_6177 1527 Hv_44K_v2
GAAGAAGGAGAAGGACACTTCTCAACGTGTTAACTCTATGGACAGTGAATGTGAAGGGAC
TCCTATTAGTTCAGCAAGCTTCATCAGCAGCGACAAGTTCCATTTTTCATTCTATAAGTG
GGCAGGGAAAGGAGCTTTGTTGATGTTGCCAGCTAGTGTGCAAGAAAAAGATGGAAATAT
TATTGGGGTTAGAAGTTTCCCTCAAGTTGTTTTGCAAGGCATCGACCTAATTGATGAGGA
AGAAAGCATGTCAACCGCCACGCCTGCATCAAAATGTCAGACCGACTATGAAGATTACAA
ATCTGGGAAGGATGGCTTGTTTGAAGGAAAACACAGTATAAACTCAACAACCAAGGAGGA
ATCTTCAGTGTTTGATGAGTACCTGCAGGGTGATAAATCCAAAGAAGCAGGAACAAAGAA
GAGTATCAATAATGCAAAGAACAATGTATCAGCAGGGAGCCCCAGAACTCAAAGTTCACG
TCCACCTTCAGGAGAGAAAAGTCATAGTAGCAGAGTGCTAAAGGATTTCATCAAAATCTT
CAGTCCTGAGGTTTCACCAAAGCGAAAAGCGGCAGTTGAGGCTCAAGATCACTCCAGTGG
AAAAAATGGAAGCAAATGTGGAGTTGAAGATAAATTTAGCATCTCGGATTTGGAGACTGG
TGAGGATATTAAGACGGATAAAACAAACAACCAGAATGCATTTTCCTCTGCAGCTGCTCA
AATGAATGACGTACAAGGTAGGATGGAGAAACCCATCCTTACAGTCGATGATGAAATGCT
CACAAGAACAGGCAAACTCTCGGGAAAGGAAGATGTTAAACCTCCATCTTCTGATAAGGA
AAAGGTGCGTGACACAACAAGTCGTGAAGAAAGTCACATGGAAAATCTTGAAGAGTGCGT
GGTTGAACATTTGGACGAAAATCAGATTCTTCAGGATGACAATGAAAAGGAACAAATAAA
GATATCTCAATCCAAAATCCGGGAGTGGTCAAAGGGTAAAGAAGGAAATATTCGGTCATT
GCTTTCTACACTGCAATATGTTCTCTGGCCTGAAAGTGGATGGAAACCAGTTCCATTGGT
TAACATAATTGAAGGAGCAGCGGTTAAGAAAGCTTATCAGAGGGCATTGTTATGTCTTCA
TCCAGATAAGTTGCAACAGCGAGGAGCTGCCATGCATCAAAAGTATATAGCAGAAAAGGT
TTTTGAGATTCTACAGGAGGCATGGAAGGAATTCAATTCTGTCACTTTTGGGTAGTCTTT
CATAGCATTTTTTGTTCAGCATGTCACTGTCTACCGCAGTGCCAAAATGGACATGGTACA
AGGACATTTGTTTAAGCCGACGAACTACGCCTTTTGTATGTACTTGTTTTGGTGTAAATG
CAAGTGTGAATCTGGAGAACCGGCCATTGCTCCCCTTTGCTAAACGAAAAGAAAGATTTT
AGCAATTAAAGTATTAAACTACACTCTTTGGTTATGGACTTTTGGTGTATTTTGATGATT
GAAATTCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10180.1	608	1e-168	protein\|expressed protein
Brachypodium v1_2	Bradi1g71310.1	627	0.0
Arabidopsis v10	None