barSeed - Barley Seed Development Database

Probe ABC10713

Source Contig ABC10713

barSeed

Links

Affymetrix Source Sequence (1488 bp)

>ABC10713 1488
AGAATTCCAGATCCCGATCAAGCGCACTACACTACACTCCCCTCATCATCATCAAGAAAC
AAAACAAACAGTGCGCGCTCCACTCCCCATCGCGCAACCCGGCGACGAACGGCCGCGCCC
ATCGAGCGCACCGCCGGCGCCCTCCCCTGCACTCCGCTCTGCGTCTTGTTGCCGTAAACC
ACTCTGCTATTAGTAGTGCTGTGCAACGTCCCCGTGCGACAAGCCAATGATGGCCAGAGC
TGCACTTCTTCCTGTTGCGTTGCTGCTGTGCCTTGCACTGGCTGGCAGCGCCAATGCTGC
ACGGAAGTCAGCGGTCGGATTCTATGAACTCAAGAACAAGAAGGGGGATTTCTCCATCAA
GGTCACCAACTGGGGCGCTGCCCTCGTCTCTGCCATTGTGCCTGATAGCAAAGGGCACTT
GGCTGATGTTGTCCTTGGGTATGACACTGCTGCTGAATATATGCGTGGCTCTGCTTCATT
CGGAGCGACGGTTGGGCGTGTAGCCAACAGAATCGCCAATGCCCGCTTTGTTCTTGATGG
GAAAACCTATCACCTCCTCCGTAACGATGGAAACAACACGATTCACGGAGGCCCCAAGGG
GTTCGGCAAGGTCATTTGGATGGTGAAGGACCATGTGAGCCATGGTGACTCCCCATACAT
CACCTTCTACTACCACAGCTTGGACGGAGAACAAGGATTCCCAGGCGCCCTCGACGTGTA
CGTGAAGTACCAGCTCTCCCGCCAGTACGACCTGAGCATCCGCATGAACGTAACCGCGAG
GAACAAGGCGACGCCGGTGAACCTCGCAAACCACGCGTACTGGAACCTCGCCGGCCACGG
CAGCGGCGACATCCTCAAGCACGAGCTCCAGATGTTCGCCTCACACTACACCCCCGTCGA
CGGGTCCATGATACCGACGGGCGAGGTCGCGCCCGTGGCCGGCACGATGTACGACTTCGG
CAGGCGGATCCCCGTGGGCACGAACATGAAGATTGTCCCAGGCGGCGGCGGCGGGTACGA
CATGAACTACGCCGTGGACGGGCAGCAGAACGCGATGCGGCCGGTGGCGCGCGTCCGGGA
GCCCAAGTCCGGGCGGGCGTTGGAGCTGTGGGCGAACCAGCCCGGGGTGCAGTTCTACAC
CGCCAGCTGGCTCATCAACGAGAAGGGGAAGGCCGGGAAGGTGTACGGGCAGTACGGCGC
GCTGTGCCTGGAGACGCAGGCCTACCCTGACGCCGTCAACCACCCCAACTTCCCGTCGTC
CATCGTGAGGCCCGGCCAGGTGTACAAGCACGACATGGTCTTCAGGTTCTCCTACCAGGC
TACCTACGACGCATGAGACGTCGTAGTGGCTGATCATCCGTCGTTTTCTTGTGGACTGTG
CTGTAACATGTTGGTAGCTTGTGTAATAAGATGTGGCATTGGGACATGAGGTTGCTGTCA
TTTGACCGCGTAATAAAATGCCGCTTCAACTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360895	1412	0.0	2 - 1411	100	1410 / 1410	CUST_25251_PI390587928	ABC10713 ABC42036
AK354990	1643	0.0	135 - 1512	100	1378 / 1378	CUST_25251_PI390587928	ABC10713 ABC42036
MLOC_57134.1	1567	0.0	123 - 901	99	778 / 779	CUST_25251_PI390587928	ABC10713 ABC42036
MLOC_5404.2	1274	0.0	39 - 1133	86	948 / 1106	None	ABC10713 ABC42036
MLOC_5404.1	1555	0.0	198 - 1292	86	946 / 1106	None	ABC10713 ABC42036
MLOC_63013.1	1327	0.0	109 - 1188	84	913 / 1083	CUST_10541_PI390587928 CUST_42072_PI390587928	ABC10713 ABC42036
MLOC_3486.1	1086	0.0	365 - 887	96	503 / 523	None	ABC10713
MLOC_3486.3	935	0.0	364 - 886	96	503 / 523	None	ABC10713
MLOC_3486.2	1083	0.0	361 - 883	96	503 / 523	None	ABC10713
MLOC_57551.1	434	0.0	1 - 382	97	371 / 382	None	ABC10713
MLOC_3486.4	727	4e-134	243 - 532	97	280 / 290	None	ABC10713
MLOC_51268.3	1306	9e-131	197 - 1173	75	742 / 983	CUST_29201_PI390587928	ABC06609 ABC10713 ABC42036
MLOC_47531.1	294	1e-114	1 - 228	99	227 / 228	None	ABC10713
MLOC_5638.1	1597	9e-111	598 - 1574	75	742 / 995	None	ABC05648 ABC10713
MLOC_51268.2	1856	2e-92	1196 - 1815	77	479 / 624	None	ABC06609 ABC10713 ABC42036
MLOC_19673.1	405	3e-86	31 - 208	99	177 / 178	None	ABC10713
MLOC_32470.1	327	2e-52	194 - 327	95	127 / 134	None	ABC10713