- Probe CUST_29201_PI390587928
- Source Contig U35_29918
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_29201_PI390587928 | Hv_44K_v2 | TGTATTACCATAGCTTCGACGGAGAGCAAGGGTTTCCAGGCGACGTGGACGTGCACGTGA | 55 | GeneList: lightcyan1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.250 | 0.328 | 1.064 | 1.710 | 1.124 | 1.930 |
Raw | 89.988 | 184.519 | 517.958 | 1275.629 | 315.059 | 569.626 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_51268.3 | 1306 | 2e-24 | 526 - 585 | 100 | 60 / 60 | plus | ABC06609 ABC10713 ABC42036 |
JLOC1 | JLOC1_32742.1 | 1465 | 8e-25 | 644 - 703 | 100 | 60 / 60 | plus | |
Harvest21 | ABC29503 | 299 | 3e-25 | 56 - 115 | 100 | 60 / 60 | plus | |
Harvest21 | ABC06610 | 1142 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29918 | 299 | 3e-25 | 56 - 115 | 100 | 60 / 60 | plus | |
Harvest35 | U35_2945 | 1303 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus |
Contig Sequence (299 bp)
>U35_29918 299 Hv_44K_v2 GGCGACGTGCTCCTTCACCGTCCACACGACCTTGTCGAATCCCCGTTCATCACCCTGTAT TACCATAGCTTCGACGGAGAGCAAGGGTTTCCAGGCGACGTGGACGTGCACGTGACGTAC CAGATCACGGGCCGGCACGCGCTGAGCGTGCGCATGAACGCGACGGCCCGGAGCAAGGCC ACGCCGGTGAACCTCGCGCACCACGCCTACTGGAACCTCGGCGGCGACGGCAGCGGCAGC GTCCTCGGCCAGAAGATCCGCCTCTTCGCCTCTCGGTACACGCCCGTGGACGCCGCGCT
Homology of Contig U35_29918 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |