barSeed - Barley Seed Development Database

Probe ABC10633

Source Contig ABC10633

barSeed

Links

Affymetrix Source Sequence (1588 bp)

>ABC10633 1588
TGCACATCTCTTGGCCGGCCCTCTCGATCCACCTGAGTTTCCCGCCGGCCGCACCGATCT
GACGGCGGCGGCGACGGCGACGGCGGCGGAGGAGGCTGCTAGGGTTAGGAGTTTTGGCGT
GATGCAGCGGCCTGGGCGGGGCCTGCAGCGGTCGGGCTCGAAGCGTGTGCTCGACCCCAC
CAACGGCACTGGCGGCAGCGGCGGCGGCGGCGACGACGACGACGACCATGCAGCCAAACG
GCCTCGCGTACCCGCCCTTGCAAGTGTCATTGTGGAAGCTCTAAAAGTTGACAGTCTGCA
GAAGCTTTGTTCATCGCTGGAGCCTATTCTTCGAAGAGTTGTAAGCGAAGAGGTAGAGCG
TGCTTTGGCCAAGTTGGGTTCTGCTAGAATTGAAGGAAGGTCCTCTCCCAAAAGAATAGA
AGGCCCTGATGGGACAAATCTTCAGCTTCAATTTAGAAGCAGGTTGTCTCTCCCACTCTT
TACTGGTGGAAAAGTAGAAGGCGAGCAGGGAGCAGCTATACATGTTGTGCTGCTGGATAC
CAACACTGGTTGTGTTGTCACTTCGGGACCTGAATCATGTGCAAAGCTGGATGTTCTTGT
GCTTGAGGGTGACTTCAATAATGAGGAAGATGAGGGTTGGACAGAAGAGGAGTTCGAAGG
CCATATTGTCAAGGAGCGCGAAGGGAAAAGACCTCTCTTGACTGGTGACCTCCAAGTGAC
TCTTAAAGAAGGTGTTGGAACCATAGGGGAGCTTATCTTCACTGACAACTCAAGCTGGAT
AAGAAGCAGGAAATTCAGACTTGGGCTGAGGGTTGCCTCTGGTTTTTGTGAAGGTATTCG
TGTTAGGGAGACGAAGACAGAAGCTTTTACTGTTAAGGATCATAGAGGGGAATTGTACAA
AAAACACTACCCTCCTGCTTTGAAGGATGATGTTTGGAGATTAGAAAAGGTTGGCAAGGA
TGGTGCATTCCACAAGAAGTTAAATGGAAGCGGAATCTATACAGTTGAAGATTTTCTTCG
TCTTCTTGTTAGGGATCAACAGAGGTTACGAAGTATTCTTGGCAGTGGCATGTCAAATAA
GATGTGGGAAAGCCTTGTTGAGCATGCAAAGACTTGTGTCTTAGGTGGGAAGCATTATAT
ATATTATGTGAATGATTCAAGAAATATCGGTGCAATATTCAATAACATATATGAGTTCAC
TGGCTTGATTGCTGATGATCAGTTCATTTCAGCTGAAAATCTCACGGACAACCAGAAGGT
CTATGCTGACACGTTGGTAAAGAAAGCATATGAGGATTGGATGCATGCTGTAGAATATGA
TGGTAAGGCACTTCTTGGCTTCAAGCAGAAAAAGAGATCTGTCATGACCAGAAGTGATAC
CGTATCAGCTTCAACAAGTAATGCTTCGAATGGTTTCGCCAATACACAAAAACAGTTACT
GTCAGGAAAAGCCGGCCAAACTTCAACAGGCACTCCGAGTGAAGCTGGAGCAAGAAGCGC
ATATAATGGAAACCAGACAGCAAGATACACTGTGAGTCCTCAGAATAACGCTGCAAACAT
TACCATGCAATATGATAGGAGTGCACTG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK363789	2476	0.0	68 - 1655	99	1584 / 1588	CUST_36424_PI390587928 CUST_33785_PI390587928	ABC08614 ABC10633 ABC21001
MLOC_61565.1	3895	0.0	2033 - 3516	99	1481 / 1484	None	ABC08614 ABC10633
MLOC_61565.2	1527	0.0	77 - 1505	99	1428 / 1429	None	ABC08614 ABC10633
MLOC_61565.5	1664	0.0	1 - 1366	99	1365 / 1366	None	ABC08614 ABC10633
MLOC_61565.3	1561	0.0	30 - 1351	99	1320 / 1322	None	ABC08614 ABC10633
MLOC_61565.4	1281	5e-94	1 - 191	99	190 / 191	None	ABC10633
MLOC_61565.6	1042	0.0	1 - 1041	100	1041 / 1041	None	ABC08614 ABC10633
AK365625	2525	0.0	208 - 1406	83	995 / 1206	CUST_16255_PI390587928	ABC08614 ABC10173 ABC10633
MLOC_61229.6	2310	0.0	150 - 1348	83	995 / 1206	CUST_6345_PI390587928 CUST_16255_PI390587928	ABC08614 ABC10173 ABC10633
MLOC_61229.3	2063	0.0	331 - 1529	83	995 / 1206	CUST_16255_PI390587928	ABC08614 ABC10173 ABC10633
MLOC_61229.1	2649	0.0	461 - 1659	83	995 / 1206	CUST_16255_PI390587928 CUST_6345_PI390587928	ABC08614 ABC10173 ABC10633
MLOC_61229.2	2652	0.0	461 - 1659	83	995 / 1206	CUST_6345_PI390587928 CUST_16255_PI390587928	ABC08614 ABC10173 ABC10633
MLOC_61229.4	2557	6e-83	1276 - 1596	84	272 / 323	CUST_6345_PI390587928 CUST_16255_PI390587928	ABC08614 ABC10173 ABC10633
MLOC_61229.5	2560	6e-83	1276 - 1596	84	272 / 323	CUST_16255_PI390587928 CUST_6345_PI390587928	ABC08614 ABC10173 ABC10633