barSeed - Barley Seed Development Database

Probe CUST_33785_PI390587928

Source Contig U35_4610

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33785_PI390587928	Hv_44K_v2	ACTGTGAGTCCTCAGAATAACGCTGCAAACATTACCATGCAATATGATAGGAGTGCACTG	1528	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.484	0.634	1.346	1.989	0.930	0.917
Raw	69.159	147.698	263.537	627.303	100.487	109.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363789	2476	2e-24	1596 - 1655	100	60 / 60	plus	ABC08614 ABC10633 ABC21001
MLOC	MLOC_57078.1	2022	2e-24	873 - 932	100	60 / 60	minus	ABC21001
MLOC	MLOC_57078.3	1538	2e-24	665 - 724	100	60 / 60	minus	ABC21001
MLOC	MLOC_57078.2	809	2e-24	678 - 737	100	60 / 60	minus	ABC21001
Harvest21	ABC10633	1588	3e-25	1529 - 1588	100	60 / 60	plus	ABC10633
Harvest35	U35_4610	1588	3e-25	1529 - 1588	100	60 / 60	plus

Contig Sequence (1588 bp)

>U35_4610 1588 Hv_44K_v2
TGCACATCTCTTGGCCGGCCCTCTCGATCCACCTGAGTTTCCCGCCGGCCGCACCGATCT
GACGGCGGCGGCGACGGCGACGGCGGCGGAGGAGGCTGCTAGGGTTAGGAGTTTTGGCGT
GATGCAGCGGCCTGGGCGGGGCCTGCAGCGGTCGGGCTCGAAGCGTGTGCTCGACCCCAC
CAACGGCACTGGCGGCAGCGGCGGCGGCGGCGACGACGACGACGACCATGCAGCCAAACG
GCCTCGCGTACCCGCCCTTGCAAGTGTCATTGTGGAAGCTCTAAAAGTTGACAGTCTGCA
GAAGCTTTGTTCATCGCTGGAGCCTATTCTTCGAAGAGTTGTAAGCGAAGAGGTAGAGCG
TGCTTTGGCCAAGTTGGGTTCTGCTAGAATTGAAGGAAGGTCCTCTCCCAAAAGAATAGA
AGGCCCTGATGGGACAAATCTTCAGCTTCAATTTAGAAGCAGGTTGTCTCTCCCACTCTT
TACTGGTGGAAAAGTAGAAGGCGAGCAGGGAGCAGCTATACATGTTGTGCTGCTGGATAC
CAACACTGGTTGTGTTGTCACTTCGGGACCTGAATCATGTGCAAAGCTGGATGTTCTTGT
GCTTGAGGGTGACTTCAATAATGAGGAAGATGAGGGTTGGACAGAAGAGGAGTTCGAAGG
CCATATTGTCAAGGAGCGCGAAGGGAAAAGACCTCTCTTGACTGGTGACCTCCAAGTGAC
TCTTAAAGAAGGTGTTGGAACCATAGGGGAGCTTATCTTCACTGACAACTCAAGCTGGAT
AAGAAGCAGGAAATTCAGACTTGGGCTGAGGGTTGCCTCTGGTTTTTGTGAAGGTATTCG
TGTTAGGGAGACGAAGACAGAAGCTTTTACTGTTAAGGATCATAGAGGGGAATTGTACAA
AAAACACTACCCTCCTGCTTTGAAGGATGATGTTTGGAGATTAGAAAAGGTTGGCAAGGA
TGGTGCATTCCACAAGAAGTTAAATGGAAGCGGAATCTATACAGTTGAAGATTTTCTTCG
TCTTCTTGTTAGGGATCAACAGAGGTTACGAAGTATTCTTGGCAGTGGCATGTCAAATAA
GATGTGGGAAAGCCTTGTTGAGCATGCAAAGACTTGTGTCTTAGGTGGGAAGCATTATAT
ATATTATGTGAATGATTCAAGAAATATCGGTGCAATATTCAATAACATATATGAGTTCAC
TGGCTTGATTGCTGATGATCAGTTCATTTCAGCTGAAAATCTCACGGACAACCAGAAGGT
CTATGCTGACACGTTGGTAAAGAAAGCATATGAGGATTGGATGCATGCTGTAGAATATGA
TGGTAAGGCACTTCTTGGCTTCAAGCAGAAAAAGAGATCTGTCATGACCAGAAGTGATAC
CGTATCAGCTTCAACAAGTAATGCTTCGAATGGTTTCGCCAATACACAAAAACAGTTACT
GTCAGGAAAAGCCGGCCAAACTTCAACAGGCACTCCGAGTGAAGCTGGAGCAAGAAGCGC
ATATAATGGAAACCAGACAGCAAGATACACTGTGAGTCCTCAGAATAACGCTGCAAACAT
TACCATGCAATATGATAGGAGTGCACTG

Homology of Contig U35_4610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g35470.2	653	protein\|calmodulin binding protein, putative, expressed
Brachypodium v1_2	Bradi3g46060.2	650
Arabidopsis v10	AT5G57580.1	647	Calmodulin-binding protein \| chr5:23314994-23317683 REVERSE LENGTH=647