barSeed - Barley Seed Development Database

Probe ABC10594

Source Contig ABC10594

barSeed

Links

Affymetrix Source Sequence (1573 bp)

>ABC10594 1573
CAGCAACCGCCGAGCCAAGAGAGCAAACCAGACGGGGCACCGCACCTCGCCTCACGTGCC
CTCCTCGTCGTCGCCCCCAAATCCACCCCGGCACGCGCCGCTCCTCACTCCTCACGCCCC
CGCCTCCGACGCCGCCCCGACGTCCACTCGCCCGCCCTCGATCTACCACAGCGGCCAGCG
GCCGGAGCAGGACGAGGACGAGCCGCCCGCCCATGGTGGCCGCCTCGGCCGGCCCCTAGG
CTCTGTTCAAGGACGCGCGCGTCGTGGGGATGGGGTACCTGCCGTCGCTGGGCGGCAAGG
CGGCGCACCTCGTGTCCGACCTCGCCACCGTCATCCTCAACCCCGTCTCCGGCCACGAGC
GGGAGCGCTCCTCCCACCACCTCCCCGAGGCCGCGGAAGGACAGGAAAATATGTATGATG
ACGAAGAATCTGAAATTCCTAATGGCCCTGACACATCTTCGTTTAGAGCATTTCTGATGT
CATTTATGTCCGCATCAAGTTCTAGCGATGATTCGATGGAGATCATACCTGAGCAGGATG
CGGACATGGAATACCCAACTTTAACACCCGTTGGCAGGGGAAACAAGGAAAGGAAGGGGT
TGCTTAGTAGAGGCAAGCATTCCATTGGAAAGATTATTAACAAGGCCGGTAGACTTGGTG
GTTTCAGGCAAAAACCCAGCCACATCATTGATGGTGAAATAGCAAGTCAAATAGAGTCAG
TTTCATCCGGTTTCAGACCCAAGGTATCAAAGGAGTCTGCTTCAAACCATAAGTTGCCAG
CTATGTTTGAACCATCAATGCTTTTATCAGAAATGATGCGAAATGTTCTTTATCCATCTC
TTCCTGTTCTTGNTCAAGGAAAGAACTGGATGCTGGTTTACAGTACCTGGAGGCACGGGA
CATCTCTATCTACTCTGTACAGAAGGAGCATGCTTTGTGCTGGTGATTCACTTCTGATAA
TTGGGGATAAAAAGGGAGCAGTTTTTGGTGGATTAGTAGAGGCTCCTTTGCGGCCGATCA
TGCAAAGGAAGTATCAGGGGACCAAGAACTGCTTCGTGTTCACCAATGTAGCTGGTCGCC
CTGTTATATATCGTCCAACGGCCTGAATGGTTCAAGTTCCACCTCAGAAACGTTTAACAA
CCCATGCCTGTCACTTTCCCAGGACTTTGAAGTCAAACATGTTGAGTTGTGGGGCTTCGT
CAATGCTTCCAGGTATGATGAGATGCTCACCGTCTGCCGCACCGAGAAACCTGGGATTTG
GAATCTGTGACTGTTCACAGCTTTTCGGAACCGTTGAGACTGGATGCCAGGTGTTATGCT
GATGGCTTGTACAGTTTTGTAAGTATATAGGCCTCGTAGAGTTTGACTGGAAGTGGTAAA
GTAAAAGGTGGAGGTGAAACAACATCAACTCTCTGACTTGACTGGAGCAACTCCCTGATC
GTGCTTGTAAATATTGTAGAGTACTGGAATTCTAAGCATTTAGATATGTACCAGTATACA
TCCCCCATGTTCCGCTTATCTTACCAATAATACACTAGAATCGCTGTGCCGATGTCAAAA
AAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_51964.5	1329	0.0	1 - 1329	99	1324 / 1329	CUST_26500_PI390587928	ABC10594
AK357227	1552	1e-168	1224 - 1552	99	327 / 329	CUST_26500_PI390587928	ABC10594
MLOC_51964.3	1704	0.0	34 - 490	100	457 / 457	CUST_26500_PI390587928 CUST_11460_PI390587928	ABC10594
MLOC_51964.1	1537	0.0	61 - 516	100	456 / 456	CUST_26500_PI390587928	ABC10594
MLOC_51964.2	2070	0.0	61 - 517	100	457 / 457	CUST_11460_PI390587928 CUST_26500_PI390587928	ABC10594
MLOC_51964.6	1438	0.0	651 - 1438	99	783 / 788	None	ABC10594 ABC17375
MLOC_51964.7	869	1e-70	140 - 287	99	147 / 148	None	ABC10594
MLOC_51964.4	1221	1e-70	1015 - 1160	100	146 / 146	CUST_11460_PI390587928	ABC10594 ABC17375
MLOC_32881.1	276	8e-92	4 - 190	99	186 / 187	None	ABC10594
MLOC_2182.2	173	3e-81	2 - 169	99	167 / 168	None	ABC10594
MLOC_2182.1	256	3e-81	85 - 252	99	167 / 168	None	ABC10594