barSeed - Barley Seed Development Database

Probe CUST_26500_PI390587928

Source Contig U35_18951

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26500_PI390587928	Hv_44K_v2	TATCTACTCTGTACAGAAGGAGCATGCTTTGTGCTGGTGATTCACTTCTGATAATTGGGG	906	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.339	0.635	1.152	1.844	1.086	1.095
Raw	29.610	87.352	136.978	351.079	72.671	79.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357227	1552	2e-24	941 - 1000	100	60 / 60	plus	ABC10594
MLOC	MLOC_51964.5	1329	2e-24	529 - 588	100	60 / 60	minus	ABC10594
MLOC	MLOC_51964.3	1704	2e-24	903 - 962	100	60 / 60	minus	ABC10594
MLOC	MLOC_51964.1	1537	2e-24	740 - 799	100	60 / 60	minus	ABC10594
MLOC	MLOC_51964.2	2070	2e-24	1273 - 1332	100	60 / 60	minus	ABC10594
JLOC1	JLOC1_33235.3	1577	8e-25	678 - 737	100	60 / 60	plus
JLOC1	JLOC1_33235.2	2002	8e-25	672 - 731	100	60 / 60	plus
JLOC1	JLOC1_33235.1	1659	8e-25	672 - 731	100	60 / 60	plus
Harvest21	ABC10594	1573	3e-25	907 - 966	100	60 / 60	plus	ABC10594
Harvest35	U35_18951	1201	3e-25	907 - 966	100	60 / 60	plus

Contig Sequence (1201 bp)

>U35_18951 1201 Hv_44K_v2
CAGCAACCGCCGAGCCAAGAGAGCAAACCAGACGGGGCACCGCACCTCGCCTCACGTGCC
CTCCTCGTCGTCGCCCCCAAATCCACCCCGGCACGCGCCGCTCCTCACTCCTCACGCCCC
CGCCTCCGACGCCGCCCCGACGTCCACTCGCCCGCCCTCGATCTACCACAGCGGCCAGCG
GCCGGAGCAGGACGAGGACGAGCCGCCCGCCCATGGTGGCCGCCTCGGCCGGCCCCTAGG
CTCTGTTCAAGGACGCGCGCGTCGTGGGGATGGGGTACCTGCCGTCGCTGGGCGGCAAGG
CGGCGCACCTCGTGTCCGACCTCGCCACCGTCATCCTCAACCCCGTCTCCGGCCACGAGC
GGGAGCGCTCCTCCCACCACCTCCCCGAGGCCGCGGAAGGACAGGAAAATATGTATGATG
ACGAAGAATCTGAAATTCCTAATGGCCCTGACACATCTTCGTTTAGAGCATTTCTGATGT
CATTTATGTCCGCATCAAGTTCTAGCGATGATTCGATGGAGATCATACCTGAGCAGGATG
CGGACATGGAATACCCAACTTTAACACCCGTTGGCAGGGGAAACAAGGAAAGGAAGGGGT
TGCTTAGTAGAGGCAAGCATTCCATTGGAAAGATTATTAACAAGGCCGGTAGACTTGGTG
GTTTCAGGCAAAAACCCAGCCACATCATTGATGGTGAAATAGCAAGTCAAATAGAGTCAG
TTTCATCCGGTTTCAGACCCAAGGTATCAAAGGAGTCTGCTTCAAACCATAAGTTGCCAG
CTATGTTTGAACCATCAATGCTTTTATCAGAAATGATGCGAAATGTTCTTTATCCATCTC
TTCCTGTTCTTGNTCAAGGAAAGAACTGGATGCTGGTTTACAGTACCTGGAGGCACGGGA
CATCTCTATCTACTCTGTACAGAAGGAGCATGCTTTGTGCTGGTGATTCACTTCTGATAA
TTGGGGATAAAAAGGGAGCAGTTTTTGGTGGATTAGTAGAGGCTCCTTTGCGGCCGATCA
TGCAAAGGAAGTATCAGGGGACCAAGAACTGCTTCGTGTTCACCAATGTAGCTGGTCGCC
CTGTTATATATCGTCCAACGGCCTGAATGGTTCAAGTTCCACCTCAGAAACGTTTAACAA
CCCATGCCTGTCACTTTCCCAGGACTTTGAAGTCAAACATGTTGAGTTGTGGGGCTTCGT
C

Homology of Contig U35_18951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11790.2	314	2e-132	protein\|TLD family protein, putative, expressed
Brachypodium v1_2	Bradi1g45500.3	277	5e-146
Arabidopsis v10	None