barSeed - Barley Seed Development Database

Probe ABC10306

Source Contig ABC10306

barSeed

Links

Affymetrix Source Sequence (725 bp)

>ABC10306 725
CAGAGGAAGAGATGACGATGTCGTCGCCGGCCTCCACCCACCTCCTCCTCCGCTCCGCGT
CCGCGGCACCTCTACTCCCTCGCCGCGCCTCCCTGCAGCTCCCCCGCGTCGCCACCGGAG
CCGCGCCGAGACGAAGCGGCCGCCTGGAGGTGGTCCGCGCGGCCACCGCGGAGGCGGCCG
AGGCCCCCGCCTACACCACCGAGTCCCTCATCCTCTACTTCAAGGCGGAGGGCACCATGG
AGGAGAGGGCCATTCCCAAGATCACCCAGGCTCTCGAGGGGATGGATGGCGTCAGTGACC
TGGAGGTGCTCGTCGAAGAAGGCATCGGAAGTGTTGTGTTAACGAAGGCGACAACGGTCC
AAGCTACCGGGGTGGCCTCAAACCTGGTGGAAGCCATCCAGGGAGTTGGTTTCAAGCTGC
AAACTCTTAGCCTCAGCTTCGAGGACTTCGACAAGGCCGATGCTGCTGCTGCTGCTGCTG
TCACAGGAGGAGAAGGAGCAGACGTCCAAGCCAGCGAGTGAGCTAACCAGCAGTGCACGT
AACGTGCTCTGATTGTTGGGGTTCAATATTTCTTCAGATATTTCTCTTTAGTTGTCATAC
ACTCGCTCCTAGCAATTTTTCAAGCTGCACGTTTTACCTTCCGGCATAACTACGTACCCA
TTAAAAATGCTGCATCTTCCCATTAAAAATAGAGAAGGAAAAAAAAAGAAAAAAAAAAAA
AAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK367396	696	0.0	1 - 696	99	688 / 697	CUST_4313_PI390587928 CUST_33305_PI390587928	ABC10306
AK253040.1	639	0.0	29 - 623	98	586 / 596	None	ABC10306
MLOC_14188.1	1256	0.0	12 - 387	98	369 / 378	CUST_4313_PI390587928 CUST_33305_PI390587928	ABC10306
MLOC_43272.1	844	1e-175	112 - 448	99	336 / 337	None	ABC10306
MLOC_14188.2	370	1e-156	1 - 326	98	319 / 327	CUST_4313_PI390587928 CUST_33305_PI390587928	ABC10306
MLOC_43272.2	149	6e-55	15 - 131	100	117 / 117	None	ABC10306