barSeed - Barley Seed Development Database

Probe CUST_33305_PI390587928

Source Contig U35_47936

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33305_PI390587928	Hv_44K_v2	ATACACTCGCTCCTAGCAATTTTTCAAGCTGCACGTTTTACCTTCCGGCATAACTACGTA	36	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.227	2.288	0.644	1.023	0.851	0.864
Raw	1088.463	1266.983	302.414	772.661	219.239	244.952

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367396	696	2e-24	595 - 654	100	60 / 60	plus	ABC10306
MLOC	MLOC_14188.1	1256	2e-24	66 - 125	100	60 / 60	minus	ABC10306
MLOC	MLOC_14188.2	370	2e-24	6 - 65	100	60 / 60	minus	ABC10306
JLOC1	JLOC1_9674.1	1356	8e-25	71 - 130	100	60 / 60	minus
JLOC1	JLOC1_9673.1	432	8e-25	303 - 362	100	60 / 60	plus
Harvest21	ABC10306	725	3e-25	597 - 656	100	60 / 60	plus	ABC10306
Harvest35	U35_47936	388	3e-25	37 - 96	100	60 / 60	minus
Harvest35	U35_4280	737	3e-25	597 - 656	100	60 / 60	plus

Contig Sequence (388 bp)

>U35_47936 388 Hv_44K_v2
CTCTTTTTAATGGGAAGATGCAGCATTTTTAATGGGTACGTAGTTATGCCGGAAGGTAAA
ACGTGCAGCTTGAAAAATTGCTAGGAGCGAGTGTATGACAACTAAAGAGAAATATCTGAA
GAAATATTGAACCCCAACAATCAGAGCACGTTACGTGCACTGCTGGTTAGCTCACTCGCT
GGCTTGGACGTCTACTCCTTCTCCTCCTGTGACAGCAGCAGCAGCAGCAGCATCGGCCTT
GTCGAAGTCCTCGAAGCTGAGGCTAAGAGTTTGCAGCTTGAAACCAACTCCCTGGATGGC
TTCCACCAGGTTTGAGGCCACCCCGGTAGCTTGGACCGTTGTCGCCTTCGTTAACACAAC
ACTTCCGATGCCTTCTTCGACGAGCACC

Homology of Contig U35_47936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None