barSeed - Barley Seed Development Database

Probe ABC10131

Source Contig ABC10131

barSeed

Links

Affymetrix Source Sequence (1234 bp)

>ABC10131 1234
AGGAAACCCGCGACGAGAAGCCTCTGGACACGGAGACGCACCGGAATCCGAAGGAAGCGC
ACGTACCACGCTCGCCGAGATAAGCTTCCTGCCGCCTCCACCTTTCCACCCACAGCTCGC
CGCCGCCTGACACCGGAGACCACCCTCGAAGACCTACTCATGGCTGTCCTGCTCCGCACC
ACCAGCTGCGCCGCCGCCACGACCGCCGGCTCCTCCTCGACCCTCCTCGCCACAACCTTC
CGCCGCGACCGCCGCCTCCTCCCGTCCCGCGCTTCGCCGGCGCGCCGTGCCTTCACTACC
CGCGCCTCGGCCGAACCGCTGGAGGTTTGCGCCAAGGCCTCCATCACCGTCCCCGACCGC
CTCGGCGATTGTCCTTTCACGCAGAGAGTTTTGTTGACGATAGAGGAGAAAAACCTGCCT
TATGAATTAAAACTAGTTGATCTTGCTAACAAACCAGATTGGTTATTTACCATTAACCCA
GAAGGTAAGGTGCCTATTGTCAAGCTCGAGGACAAATGGGTTGCTGATTCTGATGTTATA
ACACAAGTGTTAGAAGAAAAGTATCCTCAACCATCCTTGGCAACTCCACCAGAAAAGGCT
TCAATAGGGTCAAAAATATTCTCCACATTCATTGGCTTTCTCAAGAGCAAAGATACCAAT
GATGGAACAGAGCAGACACTACTCAGTGAGCTGACTTCTTTTGATAGCTATCTAAAAGAC
AATGGTCCATTTATCAATGGTGGAACAATTTCTGCCGCTGATCTCTCTCTTGCTCCGAAA
TTATATCACATGGAGATTGCTCTAGGTCACTATAAGAATTGGTCTGTCCCAGATGCACTT
GCACATGTGAAAACATACATGAAGACTATTTTCTCAATGGATTCATTTGTCAATACTCGG
GGCCTGCCAGAGGATGTTATTGCTGGATGGCGCTCAAAAGTCATGGGTTAAGTCACCGCA
GTAAAGTAAGACATCCAGATAAGATGAGAGACAAGGCTATCGGATGATGAAGAATGAAGA
GATTTCCATGTTCATGTGTATAAGCTGCAGACATTTACTGAAGAATTTCAGTGTAAAACT
TTGAAGGTAATTCTGTCAGATCTTTTTCTTTTGCTTTCAGTATCAAATGGAAAGTGTCAA
TATAAATGGTATGGACTTGTAATTTGTCATGGAACCTCGTTTTGTTAAATTTATAAATAA
AGAGTCATGGTTGTCTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366756	1187	0.0	2 - 1185	100	1184 / 1184	CUST_9394_PI390587928	ABC10131
AK365804	1121	0.0	1 - 1121	98	1120 / 1141	CUST_9394_PI390587928 CUST_9393_PI390587928	ABC10131
MLOC_71781.1	636	0.0	3 - 496	100	494 / 494	CUST_9394_PI390587928	ABC10131
MLOC_5574.1	559	0.0	13 - 384	100	372 / 372	None	ABC10131
MLOC_71781.2	437	3e-70	2 - 146	100	145 / 145	CUST_9394_PI390587928	ABC10131
MLOC_36912.2	3279	1e-119	1267 - 1500	100	234 / 234	None	ABC10131
MLOC_36912.1	3522	1e-119	1641 - 1874	100	234 / 234	None	ABC10131
MLOC_21672.2	1678	1e-58	5 - 128	100	124 / 124	None	ABC10131
MLOC_21672.3	7965	6e-57	1 - 121	100	121 / 121	None	ABC10131