barSeed - Barley Seed Development Database

Probe CUST_9394_PI390587928

Source Contig U35_18328

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9394_PI390587928	Hv_44K_v2	AACAATTTCTGCCGCTGATCTCTCTCTTGCTCCGAAATTATATCACATGGAGATTGCTCT	743	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.282	0.422	1.201	1.935	0.945	0.999
Raw	52.929	125.885	306.840	804.736	133.812	155.631

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365804	1121	2e-24	668 - 727	100	60 / 60	plus	ABC10131
MLOC	AK366756	1187	2e-24	714 - 773	100	60 / 60	plus	ABC10131
MLOC	MLOC_71781.2	437	2e-24	63 - 122	100	60 / 60	minus	ABC10131
MLOC	MLOC_71781.1	636	2e-24	64 - 123	100	60 / 60	minus	ABC10131
JLOC1	JLOC1_47729.1	500	8e-25	376 - 435	100	60 / 60	plus
Harvest21	ABC10132	641	3e-25	447 - 506	100	60 / 60	minus
Harvest21	ABC10131	1234	3e-25	744 - 803	100	60 / 60	plus	ABC10131
Harvest35	U35_18328	1234	3e-25	744 - 803	100	60 / 60	plus

Contig Sequence (1234 bp)

>U35_18328 1234 Hv_44K_v2
AGGAAACCCGCGACGAGAAGCCTCTGGACACGGAGACGCACCGGAATCCGAAGGAAGCGC
ACGTACCACGCTCGCCGAGATAAGCTTCCTGCCGCCTCCACCTTTCCACCCACAGCTCGC
CGCCGCCTGACACCGGAGACCACCCTCGAAGACCTACTCATGGCTGTCCTGCTCCGCACC
ACCAGCTGCGCCGCCGCCACGACCGCCGGCTCCTCCTCGACCCTCCTCGCCACAACCTTC
CGCCGCGACCGCCGCCTCCTCCCGTCCCGCGCTTCGCCGGCGCGCCGTGCCTTCACTACC
CGCGCCTCGGCCGAACCGCTGGAGGTTTGCGCCAAGGCCTCCATCACCGTCCCCGACCGC
CTCGGCGATTGTCCTTTCACGCAGAGAGTTTTGTTGACGATAGAGGAGAAAAACCTGCCT
TATGAATTAAAACTAGTTGATCTTGCTAACAAACCAGATTGGTTATTTACCATTAACCCA
GAAGGTAAGGTGCCTATTGTCAAGCTCGAGGACAAATGGGTTGCTGATTCTGATGTTATA
ACACAAGTGTTAGAAGAAAAGTATCCTCAACCATCCTTGGCAACTCCACCAGAAAAGGCT
TCAATAGGGTCAAAAATATTCTCCACATTCATTGGCTTTCTCAAGAGCAAAGATACCAAT
GATGGAACAGAGCAGACACTACTCAGTGAGCTGACTTCTTTTGATAGCTATCTAAAAGAC
AATGGTCCATTTATCAATGGTGGAACAATTTCTGCCGCTGATCTCTCTCTTGCTCCGAAA
TTATATCACATGGAGATTGCTCTAGGTCACTATAAGAATTGGTCTGTCCCAGATGCACTT
GCACATGTGAAAACATACATGAAGACTATTTTCTCAATGGATTCATTTGTCAATACTCGG
GGCCTGCCAGAGGATGTTATTGCTGGATGGCGCTCAAAAGTCATGGGTTAAGTCACCGCA
GTAAAGTAAGACATCCAGATAAGATGAGAGACAAGGCTATCGGATGATGAAGAATGAAGA
GATTTCCATGTTCATGTGTATAAGCTGCAGACATTTACTGAAGAATTTCAGTGTAAAACT
TTGAAGGTAATTCTGTCAGATCTTTTTCTTTTGCTTTCAGTATCAAATGGAAAGTGTCAA
TATAAATGGTATGGACTTGTAATTTGTCATGGAACCTCGTTTTGTTAAATTTATAAATAA
AGAGTCATGGTTGTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12630.1	273	2e-138	protein\|glutathione S-transferase, N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g45010.1	263	1e-144
Arabidopsis v10	AT5G16710.1	258	4e-118	\| Symbols: DHAR3 \| dehydroascorbate reductase 1 \| chr5:5483312-5484926 FORWARD LENGTH=258