barSeed - Barley Seed Development Database

Probe ABC10043

Source Contig ABC10043

barSeed

Links

Affymetrix Source Sequence (1693 bp)

>ABC10043 1693
CCGGGCTGCAGGAATTCTGCACGAGGGAAACGACGAGCTGGCCGTCATCAAGGAAGCTCC
ATCTTAGGACCATTGATGAGCTTGGACTAGATAGCTCCATTGTTTCAGGTTTTTTGGACG
AATTGGAGCAACTGCTCAAGGGTGTTGCTATGATGAAAGAGCTGACTCTTAGGACACGAG
ATTACCTTGTTTCGTTTGGTGAATGCATGTCTACAAGAATATTTTCTGCATATTTAAATA
AACTTGGGAAGAAGGCACGACAGTATGATGCTTTTGATCTTGGCTTTATAACCACTGACG
ATTTCACAAATGCCGATATTCTCGAAGCAACTTATCCTGCTGTTGCAAAGAGGCTACATG
GAGATTGGATTGATGACCCTGCTATTCCTATAGTGACTGGTTTCCTTGGGAAGGGATGGA
AATCATGTGCGGTCACAACGTTAGGAAGGGGCGGCAGTGACTTGACTGCTACAACCATTG
GCAAAGCCTTGGGGTTAAGAGAAATCCAGGTTTGGAAGGATGTAGACGGTGTGTTAACGT
GTGATCCAAATATTTATGCAAACGCAGTACCAGTACCCTACTTGACTTTTGATGAGGCAG
CTGAACTTGCTTATTTTGGCGCACAGGTTTTGCATCCCCAATCAATGCGACCAGCTAGGG
AAGGTGGTATCCCAGTTCGAGTGAAGAACTCATATAACCGTCATGCACCTGGTACTGTGA
TCACTAAAACAAGAGATATGCGCAAGAGCATATTAACCAGCATTGTATTGAAATCAAATA
TTACCATGCTGGATATAGTGAGCACAAGGATGCTCGGACAATATGGCTTTCTAGCAAAGG
TCTTCTCAATATTTGAAGATTTGGGTATTTCTGTTGATTCTGTGGCTACTAGTGAAGTCA
GCATATCATTAACATTGGATCCATCAAAACTTTGGAGTCGTGAATTGATCCAGCAGGAGC
TTGATCATGTAGTTGAAGAGCTTGAAAAGATTGCAGTTGTTCATCTCCTACAGCACAGAT
CAATCATCTCCCTGATAGGGAATGTACAGAGATCGTCTTTGATTCTTGAGAAGGCTTTCA
ATGTTCTACGCAGAAATGGTGTTAACGTTCAGATGATTTCGCAAGGGGCATCCAAGGTGA
ACATCTCCTTGGTGGTCAATGACAGCGAGGCAAAGCAGTGCGTCCAAGCCCTCCACTCGG
CATTCTTCGAGAACGGTTTCTTGTCGGAAGTTGAGGAAGCGGACCTTGCACAGAACGGGG
CCCCAGTCCTAGTAAGCTCGAATGGTGCCATCAATGGAAACTAGTCGACGTCGCCTTTTT
CTGTTTCCAGCAACGGATGCGCCGTTCTTAGGTTAAGAGGGTGATCCGACCCGGATTATT
TAGGCCACCTGAGCTGATTCGTTGGTGTTGTAAGAGCAGTATTATAGGTATCATTGGTGT
TGTAAGAGCGAGCGGTATTATAGTTAGCATGATTCTTGGAGTGCTAGCATATGGTAGCCC
AATCAATGTATGTGATTGTGTGAGGCGTGCTACTTGCTGAACTTAACCGTTGGAGGTTTG
TAGTGCACTCCGTGGGTGTCTTCTACTACCAAATACTAATAGTATGTGTGTTGTATCCTT
CTATTTATATGAGCGAATAATTCTTGTTTTGTCTTCTATTTAGACATTTTTTTGTCAAAA
AAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_38862.1	2042	0.0	1 - 1394	99	1389 / 1394	CUST_3279_PI390587928	ABC10043
MLOC_38862.2	1404	0.0	1 - 1303	99	1298 / 1303	None	ABC10043
MLOC_38862.3	1912	0.0	1 - 1291	99	1286 / 1291	None	ABC10043
MLOC_38862.4	1701	1e-54	1 - 123	98	121 / 123	None	ABC10043
AK368000	2144	0.0	578 - 1669	78	858 / 1097	CUST_24208_PI390587928 CUST_32511_PI390587928	ABC10043 ABC42796
MLOC_62018.1	2164	0.0	626 - 1717	78	858 / 1097	CUST_24208_PI390587928 CUST_32511_PI390587928	ABC10043 ABC42796
MLOC_62018.2	2099	1e-154	621 - 1683	76	837 / 1097	CUST_32511_PI390587928	ABC10043 ABC42796
MLOC_42158.1	735	2e-77	514 - 671	100	158 / 158	None	ABC10043