barSeed - Barley Seed Development Database

Probe ABC09980

Source Contig ABC09980

barSeed

Links

Affymetrix Source Sequence (1241 bp)

>ABC09980 1241
GGCCGTTCTCGCGAAAGCAAACCCTAGCGCTCTCGCGAAAAGCTCCTCGATCCATCTCCA
TGGCGCCGTCGGCTTCCGACGTCCTGCGCCTCGACGGCAACGGGAACCCGAGGACGCTCC
GCCTCTTCGCGTCGCTCGTGGAAGCCGAGTCCCGCCGCTTCGCCTCCTCTGCCGCCTCCC
AACCCGCCGAGAACGACCTCGTCCGGGCGTTCCGCGGCGGCGCGACCCCGACCATCCCCA
TCGTCGAGTTCCTCGAGCGTCTCCAGCGCTGCAACTACTTGTTCGATAGCGCCGTCTACG
TCCTCGCGGCGGCGTACCTCGCGCTCTTCATGCGCAGCCCCGCCGCGCTCGAGGCGGGGA
TCGTCGTGGAGCCGGCCACGGCGCACCGTCTGGTTTCCGTGGCGGTCCTGATCGGCGCCA
AGTTCGTCAGCCCGAGGTACTTCGAGAGGCGGGTGGAATCGTTCCAGATCTGCTCGGGCC
AGTCCATCCGGTCCAGCGAGATGTGCCCGCTGGAGTTGCTGTTCCTACGCGCCCTCAACT
ACCGCCTCTTCATCGCCGACGAAGAATTCCAGCGCTTCTTCAGGATCCTGGAACGCCGTC
CAGCTCCAGCACGCAGCAGCCTGGCTTGCGGAGCGACGAAGAGGAAGGCCCAGGACGACG
AGGAACCACGCCGCGTGCGAGCATGCCAGCTCGCCGCCCGCTACGGCATCTCAGGATTCT
TCAACCGGAGCTAAGTTCTCAAACTCTTTCTCTCACCATTGCATCGCTCGCATTGGATTT
GAATAAGCATTGAATTGAATCATGTCAGGCAGGATCTCAGCATGCTTTCCTTCTGTCGCT
TACTTGATACTACTTACTGTCGTTTCTGTGTTCCCAATGTAGGTTCTTTTCATTGGAGAT
CCAGCAGAGGGAAGGAGTTTGAGGACGCCGGAGATCAAATGCTCGCCTAAATGTCGGGTC
TGTCAGATTGAGTACGACAAGTGTTAGTCGACTCAAGTCCATTGTTCTCGTCTAGGTCTA
GTCTTGCTAAGGAGTAGCGTGTTACAGTCAGTTAGTCCTTATGTAGGGTTTATCCCATAT
CAATAAAGAGTATTCGATGTTTTGCCCGACGGCTTTTAGTATCGTGCAATTCATGTGTCC
AAAAATTATTTAGCCCAAATCAGTCATTGTGTAAGTCTGTTCATCAAGGTTTCCAAGATC
AATAAAAAGGATACATTTTGCTGGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251413.1	1109	0.0	8 - 1109	100	1102 / 1102	CUST_17153_PI390587928	ABC09980
MLOC_25517.2	1018	0.0	46 - 1018	96	938 / 973	None	ABC09980
MLOC_25517.1	839	0.0	46 - 783	99	733 / 738	None	ABC09980
MLOC_51627.1	445	1e-99	233 - 445	98	208 / 213	CUST_15457_PI390587928	ABC09980 ABC39368
MLOC_24267.1	193	2e-86	5 - 193	97	184 / 189	CUST_17153_PI390587928	ABC09980