barSeed - Barley Seed Development Database

Probe CUST_15457_PI390587928

Source Contig U35_36587

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15457_PI390587928	Hv_44K_v2	CAGGACATGTATGTCGTCTGGCCTAAGAAATGAGACTGATAACATTCTTTTCGTTTCAAA	14	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.246	1.657	1.150	0.783	0.307	0.265
Raw	334.105	699.639	419.978	452.507	62.046	58.522

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51627.1	445	7e-23	84 - 140	100	57 / 57	plus	ABC09980 ABC39368
Harvest35	U35_36587	562	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (562 bp)

>U35_36587 562 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAACGAAAAGAATGTTATCAGTCTCATTTCTTAGGCCAGACG
ACATACATGTCCTGAGCAGGAAACAATAATATACAAGTTGCGGCCACTTGCATACAAGTA
TATATATAACCCTCATGCACAATCGGTTTACAATAATGCATCTTTATTGTGAAATTAGCC
CAACACTTCATACAACAAGATCACACCAATCACTTTGAGTTCTGGATTTGAATGGCTGCT
CTGCCTAGTGACTATGACTCCAGTGAATCACTTCATATTGTCTGGGACGACAACGATGGT
GGGAAGTTGGTATATATGTGTGCGCGTAGGATGTGATGCTTCAACCTGCAGATGCTCTCA
AGCTGCAATGTCTTGACATCCAATGAGAAACATTCCGTGCCTGACATCTCTAACGATGAT
GAACTTGCGGAGTCATCTTCAGATCTTAGTAGTAGCAAATACCTCTCTGTTGCACCTCTC
AGGTAATACCGGTACCCGGATTCCAATGGGATCGTCTTCTCCATCTGCCACTGGTTGAAA
CTCTGACCTTCGTTTCGCCTGA

Homology of Contig U35_36587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None