barSeed - Barley Seed Development Database

Probe ABC09971

Source Contig ABC09971

barSeed

Links

Affymetrix Source Sequence (1661 bp)

>ABC09971 1661
CAGCCGGACCGGGACCGAGTGGACGTGCGCGGCGCACATCATCACGGCGGTGATCGGGTC
CGGGGTGCTGTCGCTGGCCTGGGGCGTGGCGCAGCTGGGATGGGTGGCCGGGCCGGTGTG
CATGCTCTGCTTCGCCGTCGTCACCTACGTCTCCGCCTCCCTCCTCTCCGACTGCTACCG
CTGCCAGGACGCTGAGAAGGGGCCCAGGAACCGCTCTTACATGGACGCCGTCCGCGTCTA
CCTCGGCAAGAAGCAGACCTGGGCTTGCGGCTCGCTGCAGTACCTGAGCCTGTACGGCTG
CGGCGTCGCGTACACCATCACCACCGCCACTAGCATCAGGGCGATTCTGAAGGCCAACTG
CTACCACGCGCACGGGCACGACGCGCCCTGCAGCTTCGACGGAAGCTACTACATGCTCAT
GTTCGGTGGGGCGCAGCTCCTCCTCTCCTCCATACCGGACTTCCACGACATGGCGTGGCT
CTCCGTCGTTGCCGCGGTCATGTCCTTCTCCTACGCCTTCATCGGCCTCGGCCTTGGCCT
CGCCAGCACCATCTCTAACGGCGTCATCAAAGGGAGCATAACGGGTGTCCCAACAAAAAC
CCCTCTTGCCAAGGTATGGCGCGTCTCACAGGCCATCGGGGACATTGCGTTCGCATACCC
GTACTCCTTGATCCTCCTAGAAATTCAGGACACCCTCAAGTCGCCACCGGCAGAGAACAA
GACGATGAAGAAGGCGTCCATCATCTCCATCCTGGTCACCACCTTCTTCTACCTCTGCTG
CGGCTGCTTCGGCTACGCCGCCTTCGGGAGCGACGCGCCGGGGAACCTCCTCACCGGCTT
CGGCTTCTACGAGCCCTACTGGCTCATCGACTTCGCCAACGCCTGCATCATCCTCCACCT
GCTCGGCGGCTACCAGGTGTACAGCCAGCCGATCTACCAGTTCGCGGACAGGTACTTCGC
GGAGCGGTACCCGGGGAGCGGGTTCGTGAACGACTTCCACACGGTGAAGGTGCCGCTGCT
GCCGCCCTACAGGGTGAACCTCCTGCGGGTGTGCTTCCGGACGGTGTACGTGGGGAGCAC
GACGGCCGTGGCGCTCTTCTTCCCCTACTTCAACGAGATCCTGGCGCTGCTGGGCGCGCT
CAACTTCTGGCCGCTGGCCATCTACTTCCCCGTGGAGATGTACTTCATCCAGCGGAAGGT
GCCCCGCTGGTCCACCAGGTGGCTCGTCCTCCAGGGCTTTAGCACTGTCTGCCTGCTCGT
CAGCGCCTTCGCCCTCGTCGGCTCCATCCAGGGGGTCATCAGCCAGAAGCTAGGCTAGTA
ATAGTATAGTATGTGCTCAGGAGAAGATCTTATTCGGGTTGGAACTTGGAATTGTATCGC
TGCTTTCTAGTGTAATGGCGATGGAGAATGTCACTGGTGGGTTAGAGCGATCGGGGAGCA
TTAGGTTTCTCCCTCTATGGTGACGAACGACCGTGTCAGATGCATTGGACAGAAACCTGT
ACACATTAGTTTTTCATTCAGGTTACTTGAGTTGAGGAGTCCCGTGCAGCGGGATGTGCA
GTTGCATAATTCAGAACTTAGACTGAATCTGATAACTGCTTCAGACTGCATGCATAAAAC
ATGCGCCTGCAGGATCGATTTTACTGAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366631	1798	0.0	155 - 1798	95	1565 / 1654	CUST_31032_PI390587928 CUST_31031_PI390587928	ABC09971
AK365200	1834	0.0	303 - 1834	94	1453 / 1542	CUST_31032_PI390587928	ABC09971
MLOC_33626.1	792	0.0	1 - 792	100	792 / 792	CUST_31031_PI390587928	ABC09971
MLOC_62449.2	536	0.0	1 - 443	100	443 / 443	None	ABC09971
MLOC_25921.2	361	0.0	1 - 360	100	360 / 360	None	ABC09971
MLOC_25921.1	356	0.0	1 - 356	99	355 / 356	None	ABC09971
MLOC_25048.1	214	3e-101	5 - 214	99	207 / 210	None	ABC09971
MLOC_62449.1	1129	1e-90	1 - 451	81	372 / 461	CUST_31032_PI390587928	ABC09971
MLOC_46704.1	156	2e-72	1 - 152	99	151 / 152	None	ABC09971
MLOC_79259.1	152	4e-70	2 - 152	99	149 / 151	None	ABC09971
MLOC_80552.1	149	4e-65	3 - 147	98	142 / 145	None	ABC09971
MLOC_76140.1	148	4e-65	1 - 148	97	144 / 148	None	ABC09971
MLOC_2454.1	130	2e-57	6 - 130	99	124 / 125	None	ABC09971