barSeed - Barley Seed Development Database

Probe CUST_31031_PI390587928

Source Contig U35_3456

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31031_PI390587928	Hv_44K_v2	TGTACACATTAGTTTTTCATTCAGGTTACTTGAGTTGAGGAGTCCCGTGCAGCGGGATGT	1698	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.717	2.232	1.323	0.659	0.257	0.255
Raw	707.531	1433.759	727.948	552.211	79.963	85.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366631	1798	2e-24	1650 - 1709	100	60 / 60	plus	ABC09971
MLOC	MLOC_33626.1	792	2e-24	21 - 80	100	60 / 60	minus	ABC09971
JLOC1	JLOC1_21765.1	997	8e-25	718 - 777	100	60 / 60	plus
Harvest21	ABC09971	1661	3e-25	1498 - 1557	100	60 / 60	plus	ABC09971
Harvest35	U35_3456	1862	3e-25	1699 - 1758	100	60 / 60	plus

Contig Sequence (1862 bp)

>U35_3456 1862 Hv_44K_v2
CTCGCTCCGGTGTCCGGTCGATCGTGTGCCGCCGTATAGCTCCGCGGTTCTTGGCTGAAC
CCCCCATTAATTCTCCCAGTCTCTTCCCGCGAAAGCGGCGCGAATCTTGGCCCAGTGTGA
GCTTCTGCGCGGCGCCGGAGCAATGGCGGTGCAGCACTCCCTCCAGGTGATCGACGGCCG
GTGCGACGACGACGGGAGCCCGCCCCGGACCGGGACCGAGTGGACGTGCGCGGCGCACAT
CATCACGGCGGTGATCGGGTCCGGGGTGCTGTCGCTGGCCTGGGGCGTGGCGCAGCTGGG
ATGGGTGGCCGGGCCGGTGTGCATGCTCTGCTTCGCCGTCGTCACCTACGTCTCCGCCTC
CCTCCTCTCCGACTGCTACCGCTGCCAGGACGCTGAGAAGGGGCCCAGGAACCGCTCTTA
CATGGACGCCGTCCGCGTCTACCTCGGCAAGAAGCAGACCTGGGCTTGCGGCTCGCTGCA
GTACCTGAGCCTGTACGGCTGCGGCGTCGCGTACACCATCACCACCGCCACTAGCATCAG
GGCGATTCTGAAGGCCAACTGCTACCACGCGCACGGGCACGACGCGCCCTGCAGCTTCGA
CGGAAGCTACTACATGCTCATGTTCGGTGGGGCGCAGCTCCTCCTCTCCTCCATACCGGA
CTTCCACGACATGGCGTGGCTCTCCGTCGTTGCCGCGGTCATGTCCTTCTCCTACGCCTT
CATCGGCCTCGGCCTTGGCCTCGCCAGCACCATCTCTAACGGCGTCATCAAAGGGAGCAT
AACGGGTGTCCCAACAAAAACCCCTCTTGCCAAGGTATGGCGCGTCTCACAGGCCATCGG
GGACATTGCGTTCGCATACCCGTACTCCTTGATCCTCCTAGAAATTCAGGACACCCTCAA
GTCGCCACCGGCAGAGAACAAGACGATGAAGAAGGCGTCCATCATCTCCATCCTGGTCAC
CACCTTCTTCTACCTCTGCTGCGGCTGCTTCGGCTACGCCGCCTTCGGGAGCGACGCGCC
GGGGAACCTCCTCACCGGCTTCGGCTTCTACGAGCCCTACTGGCTCATCGACTTCGCCAA
CGCCTGCATCATCCTCCACCTGCTCGGCGGCTACCAGGTGTACAGCCAGCCGATCTACCA
GTTCGCGGACAGGTACTTCGCGGAGCGGTACCCGGGGAGCGGGTTCGTGAACGACTTCCA
CACGGTGAAGGTGCCGCTGCTGCCGCCCTACAGGGTGAACCTCCTGCGGGTGTGCTTCCG
GACGGTGTACGTGGGGAGCACGACGGCCGTGGCGCTCTTCTTCCCCTACTTCAACGAGAT
CCTGGCGCTGCTGGGCGCGCTCAACTTCTGGCCGCTGGCCATCTACTTCCCCGTGGAGAT
GTACTTCATCCAGCGGAAGGTGCCCCGCTGGTCCACCAGGTGGCTCGTCCTCCAGGGCTT
TAGCACTGTCTGCCTGCTCGTCAGCGCCTTCGCCCTCGTCGGCTCCATCCAGGGGGTCAT
CAGCCAGAAGCTAGGCTAGTAATAGTATAGTATGTGCTCAGGAGAAGATCTTATTCGGGT
TGGAACTTGGAATTGTATCGCTGCTTTCTAGTGTAATGGCGATGGAGAATGTCACTGGTG
GGTTAGAGCGATCGGGGAGCATTAGGTTTCTCCCTCTATGGTGACGAACGACCGTGTCAG
ATGCATTGGACAGAAACCTGTACACATTAGTTTTTCATTCAGGTTACTTGAGTTGAGGAG
TCCCGTGCAGCGGGATGTGCAGTTGCATAATTCAGAACTTAGACTGAATCTGATAACTGC
TTCAGACTGCATGCATAAAACATGCGCCTGCAGGATCGATTTTACTGAAAAAAAAAAAAA
AA

Homology of Contig U35_3456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g39489.1	467	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi5g13050.1	468
Arabidopsis v10	AT5G23810.1	467	\| Symbols: AAP7 \| amino acid permease 7 \| chr5:8028461-8030730 FORWARD LENGTH=467