barSeed - Barley Seed Development Database

Probe ABC09898

Source Contig ABC09898

barSeed

Links

Affymetrix Source Sequence (1298 bp)

>ABC09898 1298
GCGTCGATGCCTTCGTACCCGTCTTTCAGCATAACCTCGAGGCTTTCAAGCAATGCGTCT
ACTCCATCGATGATCTCCATGCATGAACCGTGAGATGCATCGAGTAGCAGCCAATCCATC
ACAAGAATATGCAGCACAACACATACATCAACTTTAAAGGGTTCATTGTTGGCAATCCAT
TAACTGATGATTATTATGACTCGAAGGGACTGGCTGAATATGCTTGGAGTCATGCAGTTG
TATCAGATGAAGTTTACGATCGCATAAAAAAGGATTGTGATTTTAGAGCCTCAAACTGGA
CCGATGATTGCAACAAAGCCATGAACACCATCTATGGACAGTACCAGTTGATCGACATAT
ACAACATTTATGCGCCCAAGTGCAATCTTGGACAAACATCAGCAGCATCTGTTGTTGATA
CAGAACTCAAATATAGTGAAGATGAACCTTTCAGGAGGAGGATTAGGTTGTTCTCGGGAT
ACGATGAATGCTACTCATCTTATGCCCAAGAGTACTTCAATAAGGCAGATGTGCAGAGAG
CACTTCATGCAAATGTCAATGGGATGTTGCCTGGGAAATGGCAAGTTTGCAGTGACTCCA
TTCTGAAGTCGTACAACTTTTCCGTACTTTCCATTCTACCAATATACTCCAAGCTCATCA
AAGCAGGACTGAGAGTCTGGCTCTACAGTGGAGATGCAGATGGCAGGGTCCCAGTGATCG
GGTCACGGTATTGTGTGGAAGCACTTGGCTTGCCTATCAAGTCACAGTGGCAACCATGGT
ACCTGGACAAACAGGTTGCTGGAAGATTTGTGGAGTACCATGGTATGACCATGGTGACAA
TAAGAGGGGCTGGCCACTTGGTACCCCTCAACAAGCCCGCAGAAGGGACAGCGCTGATCG
ACACATTCCTTCTTGGTAAACAGCTTCCTACACACCGGTGACGGTTAAACTTGGGGTAAG
GTGAAATCGACCTATGACCCAAAAGGAGCTCAAGGAGAGCTTATGCAGGAAGCGTAACAC
AAATAACGCATGGTTTCTTCAAAGATGGGATATGCTGAATTCTGGGGCCGATCCTTTCCG
AGGATGAATCTGTCTTAAAGAGAACTGTTGATGTCCCTATTGGAGATGCTTGGTATATTT
TTCATTGATCAGCTGAACATGTATTGATCAAATTGTGCTAGGGTTCAAGAAATGACAGGT
GGCACATACTAATCTTTGTTAACGGTCCAGGCTTAAATTTATCTCCTCAAAAGTAAAAGT
AAAACATTATGAATCACTGTAAAGGTCACTCCTATTAG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11531.4	2066	0.0	823 - 1984	100	1162 / 1162	CUST_5993_PI390587928 CUST_32141_PI390587928	ABC09898
MLOC_11531.2	1925	0.0	824 - 1925	100	1102 / 1102	CUST_5993_PI390587928 CUST_32141_PI390587928	ABC09898
MLOC_11531.6	1824	0.0	736 - 1824	99	1087 / 1089	CUST_32141_PI390587928	ABC09898
MLOC_11531.1	1993	0.0	1454 - 1993	100	540 / 540	CUST_32141_PI390587928	ABC09898
AK361152	3385	4e-69	1583 - 1741	97	155 / 160	CUST_5994_PI390587928 CUST_9926_PI390587928	ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 ABC09897 ABC09898 ABC26571
MLOC_11854.1	2095	4e-69	234 - 392	97	155 / 160	CUST_5994_PI390587928 CUST_9926_PI390587928	ABC09897 ABC09898
MLOC_11854.2	2016	4e-69	234 - 392	97	155 / 160	CUST_5994_PI390587928 CUST_9926_PI390587928	ABC09897 ABC09898