barSeed - Barley Seed Development Database

Probe CUST_5993_PI390587928

Source Contig U35_18726

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5993_PI390587928	Hv_44K_v2	GGCACATACTAATCTTTGTTAACGGTCCAGGCTTAAATTTATCTCCTCAAAAGTAAAAGT	1200	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.043	1.575	2.568	1.499	0.234	0.150
Raw	41.937	107.367	145.977	133.169	5.982	2.671

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11531.2	1925	2e-24	1857 - 1916	100	60 / 60	plus	ABC09898
MLOC	MLOC_11531.4	2066	2e-24	1887 - 1946	100	60 / 60	plus	ABC09898
JLOC1	JLOC1_7641.2	2007	8e-25	1843 - 1902	100	60 / 60	plus
JLOC1	JLOC1_7641.1	2112	8e-25	1948 - 2007	100	60 / 60	plus
Harvest21	ABC09898	1298	3e-25	39 - 98	100	60 / 60	minus	ABC09898
Harvest35	U35_18726	1298	3e-25	1201 - 1260	100	60 / 60	plus

Contig Sequence (1298 bp)

>U35_18726 1298 Hv_44K_v2
GCGTCGATGCCTTCGTACCCGTCTTTCAGCATAACCTCGAGGCTTTCAAGCAATGCGTCT
ACTCCATCGATGATCTCCATGCATGAACCGTGAGATGCATCGAGTAGCAGCCAATCCATC
ACAAGAATATGCAGCACAACACATACATCAACTTTAAAGGGTTCATTGTTGGCAATCCAT
TAACTGATGATTATTATGACTCGAAGGGACTGGCTGAATATGCTTGGAGTCATGCAGTTG
TATCAGATGAAGTTTACGATCGCATAAAAAAGGATTGTGATTTTAGAGCCTCAAACTGGA
CCGATGATTGCAACAAAGCCATGAACACCATCTATGGACAGTACCAGTTGATCGACATAT
ACAACATTTATGCGCCCAAGTGCAATCTTGGACAAACATCAGCAGCATCTGTTGTTGATA
CAGAACTCAAATATAGTGAAGATGAACCTTTCAGGAGGAGGATTAGGTTGTTCTCGGGAT
ACGATGAATGCTACTCATCTTATGCCCAAGAGTACTTCAATAAGGCAGATGTGCAGAGAG
CACTTCATGCAAATGTCAATGGGATGTTGCCTGGGAAATGGCAAGTTTGCAGTGACTCCA
TTCTGAAGTCGTACAACTTTTCCGTACTTTCCATTCTACCAATATACTCCAAGCTCATCA
AAGCAGGACTGAGAGTCTGGCTCTACAGTGGAGATGCAGATGGCAGGGTCCCAGTGATCG
GGTCACGGTATTGTGTGGAAGCACTTGGCTTGCCTATCAAGTCACAGTGGCAACCATGGT
ACCTGGACAAACAGGTTGCTGGAAGATTTGTGGAGTACCATGGTATGACCATGGTGACAA
TAAGAGGGGCTGGCCACTTGGTACCCCTCAACAAGCCCGCAGAAGGGACAGCGCTGATCG
ACACATTCCTTCTTGGTAAACAGCTTCCTACACACCGGTGACGGTTAAACTTGGGGTAAG
GTGAAATCGACCTATGACCCAAAAGGAGCTCAAGGAGAGCTTATGCAGGAAGCGTAACAC
AAATAACGCATGGTTTCTTCAAAGATGGGATATGCTGAATTCTGGGGCCGATCCTTTCCG
AGGATGAATCTGTCTTAAAGAGAACTGTTGATGTCCCTATTGGAGATGCTTGGTATATTT
TTCATTGATCAGCTGAACATGTATTGATCAAATTGTGCTAGGGTTCAAGAAATGACAGGT
GGCACATACTAATCTTTGTTAACGGTCCAGGCTTAAATTTATCTCCTCAAAAGTAAAAGT
AAAACATTATGAATCACTGTAAAGGTCACTCCTATTAG

Homology of Contig U35_18726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g22954.1	501	1e-154	protein\|serine carboxypeptidase, putative, expressed
Brachypodium v1_2	Bradi2g12450.1	474	2e-166
Arabidopsis v10	AT3G17180.1	478	3e-112	\| Symbols: scpl33 \| serine carboxypeptidase-like 33 \| chr3:5855861-5859157 REVERSE LENGTH=478