barSeed - Barley Seed Development Database

Probe ABC09536

Source Contig ABC09536

barSeed

Links

Affymetrix Source Sequence (1143 bp)

>ABC09536 1143
CCCGTCTCCGCCGCGCTTGGCCCCGCCCGAATCCATCGGTAACTTTTCTCGTTGTTCCAC
AGGTGGTGGGCTGGTGGCAAGAAACAATGGGCAGGCGCAACAGCTGCACCATTTATGTCG
GCAATCTCCCTGGGGACATTCGTGAGAGGGAGGTTGAGGATCTCTTTTACAAGTATGGCC
GTATTGTCGATATTGACTTGAAGATTCCTCCAAGGCCTCCTGGTTATGCTTTTGTCGAGT
TTGAGGATCCTCGTGATGCTGATGACGCAATTTATGGCCGTGATGGTTATGACTTTGATG
GCTACAGGCTGCGGCTCATGGTGGAAAAGCTCAATCTTACTCGTACGATCGCCCAAGCAG
CTTTAGCAGTGGACGCCGTGGAGGTGTTTCTAGGCGCTCTGAGTACCGAGTTATGGTTGA
TGGTTTACCTTCGTCAGCGTCATGGCAAGATCTCAAGGACCATATGCGACGGGCTGGCGA
TGTCTGCTTTTCTGATGTATACCGCGAGGCTGGAGCAACTGTTGGAATTGTGGATTATAC
AAACTACGATGACATGAAATATGCGATTAGGAAGCTCGATGGTACAGAGTTCAGAAATGC
ATTTTCAAGGGCATATATCAGGGTGAGGGAGTATGATGCTAGATCAAGAAGCAGGAGCCG
TAGCCTCTCTTACTCGAGAAGTCGCAGCTATAGCAGATCTGTCTCTCGGTCACCCTTACC
TGTGGATGAAAGATCACTGTCAAGATCTCGATCCCCTGTTTCTTCGGTGTCTGGAAAATC
CGTGAGCAGAAGCCCCAGGAGCAGGAGTGTATCCCGTTCTGCATCTCCTGCGAGGTCGGA
TTGATCTTGGGCGCACCTGTAAACGGCGAGCGACCACTTCAGGATCCAGTTTGCGACCTC
ATAGGCGGTCGCGTATGCTTCATCGTGTTCTGCGCAGCGTTATGTTTGCGAGGCCTGATG
CCTGTCTGTCTACTTGTTATGTGCTCTGTTCTCAGACTCAGAGTTGTATTCAGAGACCCG
TACCCTTTCTTTTTCTCCTGAATGATGACTTGGAGATTTGACCTGTAGTTTGTGGTAACT
TGTATTCAGAGGAGACCTGTGCTTTGTGGTAATGTGTTATGCTATCAAAAAAAAAAAAAA
AAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_6125.10	1319	0.0	1 - 1105	99	1095 / 1105	CUST_3502_PI390587928	ABC09536 ABC44079
MLOC_6125.9	1472	0.0	1 - 363	100	363 / 363	CUST_3500_PI390587928 CUST_3502_PI390587928	ABC09536 ABC44079
MLOC_6125.2	2270	0.0	69 - 465	100	397 / 397	CUST_3500_PI390587928 CUST_3503_PI390587928 CUST_3502_PI390587928	ABC09536 ABC44079
MLOC_6125.7	1939	0.0	39 - 435	100	397 / 397	CUST_3502_PI390587928 CUST_3500_PI390587928	ABC09536 ABC44079
MLOC_6125.4	1351	0.0	63 - 459	100	397 / 397	CUST_3502_PI390587928 CUST_3503_PI390587928	ABC09536 ABC44079
MLOC_6125.5	2348	0.0	45 - 441	100	397 / 397	CUST_3500_PI390587928 CUST_3502_PI390587928	ABC09536 ABC44079
MLOC_6125.11	717	0.0	37 - 611	98	565 / 575	CUST_3502_PI390587928	ABC09536
MLOC_6125.3	1762	0.0	63 - 459	100	397 / 397	CUST_3500_PI390587928 CUST_3503_PI390587928 CUST_3502_PI390587928	ABC09536 ABC44079
MLOC_6125.6	2034	3e-164	1617 - 1930	100	314 / 314	CUST_3502_PI390587928 CUST_3500_PI390587928	ABC09536 ABC44079
MLOC_6125.1	2431	9e-150	1561 - 1848	100	288 / 288	CUST_3500_PI390587928 CUST_3502_PI390587928 CUST_3503_PI390587928	ABC09536 ABC44079
MLOC_6123.1	675	0.0	261 - 655	100	395 / 395	CUST_3500_PI390587928	ABC09536 ABC44079
MLOC_6125.8	1169	7e-66	1024 - 1160	100	137 / 137	CUST_3500_PI390587928	ABC09536 ABC44079