barSeed - Barley Seed Development Database

Probe CUST_3502_PI390587928

Source Contig U35_18193

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3502_PI390587928	Hv_44K_v2	GATCCTCGTGATGCTGATGATGCAATTTATGGCCGTGATGGTTATGACTTTGATGGCTAC	283	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.553	0.792	1.525	1.876	1.057	0.906
Raw	60.800	133.707	223.906	450.712	88.490	81.129

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6125.3	1762	7e-23	1634 - 1693	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.1	2431	7e-23	2049 - 2108	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.2	2270	7e-23	1888 - 1947	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.7	1939	7e-23	1500 - 1559	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.9	1472	7e-23	954 - 1013	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.11	717	7e-23	307 - 366	98	59 / 60	minus	ABC09536
MLOC	MLOC_6125.5	2348	7e-23	1938 - 1997	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.10	1319	7e-23	801 - 860	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.4	1351	7e-23	859 - 918	98	59 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.6	2034	7e-23	1626 - 1685	98	59 / 60	minus	ABC09536 ABC44079
JLOC1	JLOC1_3970.15	1189	4e-23	211 - 270	98	59 / 60	plus
JLOC1	JLOC1_3970.14	2174	4e-23	209 - 268	98	59 / 60	plus
JLOC1	JLOC1_3970.13	1827	4e-23	374 - 433	98	59 / 60	plus
JLOC1	JLOC1_3970.12	1981	4e-23	374 - 433	98	59 / 60	plus
JLOC1	JLOC1_3970.11	2339	4e-23	374 - 433	98	59 / 60	plus
JLOC1	JLOC1_3970.10	1170	4e-23	228 - 287	98	59 / 60	plus
JLOC1	JLOC1_3970.9	1352	4e-23	374 - 433	98	59 / 60	plus
JLOC1	JLOC1_3970.8	1505	4e-23	374 - 433	98	59 / 60	plus
JLOC1	JLOC1_3970.7	1938	4e-23	295 - 354	98	59 / 60	plus
JLOC1	JLOC1_3970.6	1469	4e-23	374 - 433	98	59 / 60	plus
JLOC1	JLOC1_3970.5	1136	4e-23	194 - 253	98	59 / 60	plus
JLOC1	JLOC1_3970.4	1796	4e-23	189 - 248	98	59 / 60	plus
JLOC1	JLOC1_3970.3	1810	4e-23	167 - 226	98	59 / 60	plus
JLOC1	JLOC1_3970.2	1587	4e-23	645 - 704	98	59 / 60	plus
JLOC1	JLOC1_3970.1	1338	4e-23	243 - 302	98	59 / 60	plus
Harvest21	ABC09535	1141	3e-25	284 - 343	100	60 / 60	plus
Harvest21	ABC09536	1143	1e-23	246 - 305	98	59 / 60	plus	ABC09536
Harvest35	U35_18193	1141	3e-25	284 - 343	100	60 / 60	plus

Contig Sequence (1141 bp)

>U35_18193 1141 Hv_44K_v2
GGATCGCCTCCAGCCAGTTGGGTTCTCCGCCAGTCTCTCCCGTCTCCGCCGCGCTTGGCC
CCGCCCGAATCCATCGGTAACTTTTCTCGTTGTTCCACAGGTGGTGGGCTGGTGGCAAGA
AACAATGGGCAGGCGCAACAGCTGCACCATTTATGTCGGCAATCTCCCTGGGGACATTCG
TGAGAGGGAGGTTGAGGATCTCTTTTACAAGTATGGCCGTATTGTCGATATTGACTTGAA
GATTCCTCCAAGGCCTCCTGGTTATGCTTTTGTCGAGTTTGAAGATCCTCGTGATGCTGA
TGATGCAATTTATGGCCGTGATGGTTATGACTTTGATGGCTACAGGCTGCGGGTGGAATT
AGCTCATGGTGGAAAAGCTCAATCTTACTCGTACGATCGCCCAAGCAGCTTTAGCAGTGG
ACGCCGTGGAGGTGTTTCTAGGCGCTCTGAGTACCGAGTTATGGTTGATGGTTTACCTTC
GTCAGCGTCATGGCAAGATCTCAAGGACCATATGCGACGGGCTGGCGATGTCTGCTTTTC
TGATGTATACCGCGAGGCTGGAGCAACTGTTGGAATTGTGGATTATACAAACTACGATGA
CATGAAATATGCGATTAGGAAGCTCGATGGTACAGAGTTCAGAAATGCATTTTCAAGGGC
ATATATCAGGGTGAGGGAGTATGATGCTAGATCAAGAAGCAGGAGCCGTAGCCTCTCTTA
CTCGAGAAGTCGCAGCTATAGCAGATCACTGTCAAGATCTCGATCCCCTGTTTCTTCGGT
GTCTGGAAAATCCGTGAGCAGAAGCCCCAGGAGCAGGAGTGTATCCCGTTCTGCATCTCC
TGCGAGGTCGGATTGATCTTGGGCGCACCTGTAAACGGCGAGCGACCACTTCAGGATCCA
GTTTGCGACCTCATAGGCGGTCGCGTATGCTTCATCGTGTTCTGCGCAGCGTTATGTTTG
CGAGGCCTGATGCCTGTCTGTCTACTTGTTATGTGCTCTGTTCTCAGACTCAGAGTTGTA
TTCAGAGACCCGTACCCTTTCTTTTTCTCCTGAATGATGACTTGGAGATTTGACCTGTAG
TTTGTGGTAACTTGTATTCAGAGGAGACCTGTGCTTTGTGGTAATGTGTTATGCTATCAC
A

Homology of Contig U35_18193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g30140.2	288	2e-96	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi2g11990.2	238	1e-107
Arabidopsis v10	AT1G09140.1	268	6e-85	\| Symbols: ATSRP30, SR30, At-SR30 \| SERINE-ARGININE PROTEIN 30 \| chr1:2942887-2945818 REVERSE LENGTH=268