barSeed - Barley Seed Development Database

Probe ABC09514

Source Contig ABC09514

barSeed

Links

Affymetrix Source Sequence (1762 bp)

>ABC09514 1762
GAAGAACTGCAGAGACCAGGAAAATATTAGCATGGAGAGGAGAAAGCGGAAAAGACATGA
AGACACTGTGGACACATCATTGTACCTCAAGAAGCACAAGATATTATCATACTTCTTTGA
TAAACAAAACAAGGGAGCTGAAGCAGATGGCCTCTTAATTGACGACGATAGTCATGGTCA
AGTTGGGGATGATACTAGACGTCGCCTCGAAATTGTTGGTTTGCCTGCGTCCAAGGAACA
TGATATGGTTTCCAACCAATTTGTGTTACAAAAAGTTCTCATGAAAATTGGTGGTATCCA
GTCTCGAGTTCATCGTCTACAAGAGCGTCTTAGCAAGGCTCGTTCTAAACAAGCAAAGTT
GGCATCTTTCATGGATCATGACCAGGTCAAGGTGGCTGAGAAGAGGCAAAGGATACAAAA
GCGTGCATTCTCTCCTGAGAATGATCGGTATGGTAAGCCACAGAAAAAGAAGAAGCTAAA
CATTTTGCTGGAGCAGGAGGATAGACCAACTCTGTCAGTAAAACCCACATTGTCTAAGAG
GGCAACTGATTGTCTAACAGAAGATCCACAGGGGAATAGTGAAGAAAAAGCTCCAGGGAG
GAGCCAGGTACATAAGAAAGACATCACAGTGGACCTACTCCTAGCTGTTGAAAGTTCCTT
ACCAAATGGTCATTTGGGAGATTTGTGCAAAGAAAACACTGACGATATCCTCATAGACAA
CCGAGGAGCCAAAGATGGGTATCAGCCGTTTGAGAACGCCAAGCATCCACTGGAGAAATT
ACCATTGCTTACTGAGAATGTTGCTAAAACTGCTCTATCAGAAGTTGGGAATACCTCTGA
ACCAGTGGAAGCCGAGAAAAATTTGGTCCCACTGGTTAAGCAAGAAGTAATTACTGAAAA
ACTGCCAGTTTTGAAGCATGTCTACTCTGGAAAGAAACGTGGAAGGACACCCAAGACAGA
AGATATGGGTTCTGAAGCTGCATCCAAGAACCACAATAAAGAGGCCTCCGAAACACCTTC
TGCAAAGCAGAAAGCTCAGACCACACCCTGCGCCGAAAACGAGAATGCTGGCTCAAAGAA
GCAGAAAACCGTGGACATTCAGTCTCCTTCAAAGAATTCGAACCCTGGGAATTCTTGTTC
AGCTGCAGAGAAGCTGAAAATTGGGAACTCATCCTCAGCTGCAAAGGCGCAGAAAACTGG
AAACTCATCCCCAGCCGCAAAGACTCCGAAAACAGGGAACTCATCGTCAGATGGAAAAAA
GCAGGCAGCTGCAAACTCATCATCAGCTGCAAAGAAGCCCAAAATGGGGAACTCATCCTC
AGATGGAAAGAAGCAGGCAGCTGGAAACACATTCACAGCTGCGAAGTTGAAGATAGGAAA
GTCATCCCCAGATGGAGAGAAGCAGGCAGCTGGAAACTCGTCCGCACCTGCAAGGAAGGA
GATGAGTGAAAACATCCACACCAATCTTAGGATTGAGAAAGCTATCTTGGTGGAGGTGAA
CAGCAGGAGGAGTCAAAGGGTACGGAAGCCTAAGGTTTACTGAAGCAAAACCGGACTGCT
CAAATTCAGGGTAGTGTAATTATGGGAAACAGGTCTTGTTTATCAATCTATCCCTTTCGT
CTTGTTGAAGTTCATAGCTATATTGACAGCGGCTTCTCGCAAAGTAATTTAGTGTAGATA
TTCCTAACCTTTTAGTTTGGGTCACCAAACTAAAAATATGCTACTTATGTATAGTTGTTC
TTTGCTGAGCTTGTGATGCAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_17343.5	3291	0.0	715 - 2476	100	1762 / 1762	CUST_5231_PI390587928	ABC09514 ABC40496
MLOC_17343.1	3319	0.0	805 - 2566	100	1762 / 1762	CUST_34256_PI390587928 CUST_5231_PI390587928	ABC09514 ABC40496
MLOC_17343.4	3674	0.0	947 - 2708	100	1762 / 1762	CUST_34256_PI390587928 CUST_5231_PI390587928	ABC09514 ABC40496
MLOC_17343.6	3373	0.0	795 - 2558	99	1762 / 1764	CUST_34256_PI390587928 CUST_5231_PI390587928	ABC09514 ABC40496
MLOC_17343.2	3436	1e-55	805 - 923	100	119 / 119	CUST_34256_PI390587928 CUST_5231_PI390587928	ABC09514 ABC40496
MLOC_17343.3	3791	1e-55	947 - 1065	100	119 / 119	CUST_34256_PI390587928 CUST_5231_PI390587928	ABC09514 ABC40496