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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5231_PI390587928Hv_44K_v2GTCACCAAACTAAAAATATGCTACTTATGTATAGTTGTTCTTTGCTGAGCTTGTGATGCA1700GeneList: purple
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4850.8161.2911.6601.1401.261
Raw 121.181322.398445.141891.901214.602259.170



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_17343.532912e-242415 - 247410060 / 60plus ABC09514 ABC40496
MLOCMLOC_17343.633732e-242497 - 255610060 / 60plus ABC09514 ABC40496
MLOCMLOC_17343.133192e-242505 - 256410060 / 60plus ABC09514 ABC40496
MLOCMLOC_17343.234362e-242622 - 268110060 / 60plus ABC09514 ABC40496
MLOCMLOC_17343.337912e-242764 - 282310060 / 60plus ABC09514 ABC40496
MLOCMLOC_17343.436742e-242647 - 270610060 / 60plus ABC09514 ABC40496
JLOC1JLOC1_11972.533768e-252296 - 235510060 / 60plus
JLOC1JLOC1_11972.333878e-252307 - 236610060 / 60plus
JLOC1JLOC1_11972.232318e-252415 - 247410060 / 60plus
Harvest21ABC0951417623e-251701 - 176010060 / 60plusABC09514
Harvest35U35_1372817623e-251701 - 176010060 / 60plus



Contig Sequence (1762 bp)

>U35_13728 1762 Hv_44K_v2
GAAGAACTGCAGAGACCAGGAAAATATTAGCATGGAGAGGAGAAAGCGGAAAAGACATGA
AGACACTGTGGACACATCATTGTACCTCAAGAAGCACAAGATATTATCATACTTCTTTGA
TAAACAAAACAAGGGAGCTGAAGCAGATGGCCTCTTAATTGACGACGATAGTCATGGTCA
AGTTGGGGATGATACTAGACGTCGCCTCGAAATTGTTGGTTTGCCTGCGTCCAAGGAACA
TGATATGGTTTCCAACCAATTTGTGTTACAAAAAGTTCTCATGAAAATTGGTGGTATCCA
GTCTCGAGTTCATCGTCTACAAGAGCGTCTTAGCAAGGCTCGTTCTAAACAAGCAAAGTT
GGCATCTTTCATGGATCATGACCAGGTCAAGGTGGCTGAGAAGAGGCAAAGGATACAAAA
GCGTGCATTCTCTCCTGAGAATGATCGGTATGGTAAGCCACAGAAAAAGAAGAAGCTAAA
CATTTTGCTGGAGCAGGAGGATAGACCAACTCTGTCAGTAAAACCCACATTGTCTAAGAG
GGCAACTGATTGTCTAACAGAAGATCCACAGGGGAATAGTGAAGAAAAAGCTCCAGGGAG
GAGCCAGGTACATAAGAAAGACATCACAGTGGACCTACTCCTAGCTGTTGAAAGTTCCTT
ACCAAATGGTCATTTGGGAGATTTGTGCAAAGAAAACACTGACGATATCCTCATAGACAA
CCGAGGAGCCAAAGATGGGTATCAGCCGTTTGAGAACGCCAAGCATCCACTGGAGAAATT
ACCATTGCTTACTGAGAATGTTGCTAAAACTGCTCTATCAGAAGTTGGGAATACCTCTGA
ACCAGTGGAAGCCGAGAAAAATTTGGTCCCACTGGTTAAGCAAGAAGTAATTACTGAAAA
ACTGCCAGTTTTGAAGCATGTCTACTCTGGAAAGAAACGTGGAAGGACACCCAAGACAGA
AGATATGGGTTCTGAAGCTGCATCCAAGAACCACAATAAAGAGGCCTCCGAAACACCTTC
TGCAAAGCAGAAAGCTCAGACCACACCCTGCGCCGAAAACGAGAATGCTGGCTCAAAGAA
GCAGAAAACCGTGGACATTCAGTCTCCTTCAAAGAATTCGAACCCTGGGAATTCTTGTTC
AGCTGCAGAGAAGCTGAAAATTGGGAACTCATCCTCAGCTGCAAAGGCGCAGAAAACTGG
AAACTCATCCCCAGCCGCAAAGACTCCGAAAACAGGGAACTCATCGTCAGATGGAAAAAA
GCAGGCAGCTGCAAACTCATCATCAGCTGCAAAGAAGCCCAAAATGGGGAACTCATCCTC
AGATGGAAAGAAGCAGGCAGCTGGAAACACATTCACAGCTGCGAAGTTGAAGATAGGAAA
GTCATCCCCAGATGGAGAGAAGCAGGCAGCTGGAAACTCGTCCGCACCTGCAAGGAAGGA
GATGAGTGAAAACATCCACACCAATCTTAGGATTGAGAAAGCTATCTTGGTGGAGGTGAA
CAGCAGGAGGAGTCAAAGGGTACGGAAGCCTAAGGTTTACTGAAGCAAAACCGGACTGCT
CAAATTCAGGGTAGTGTAATTATGGGAAACAGGTCTTGTTTATCAATCTATCCCTTTCGT
CTTGTTGAAGTTCATAGCTATATTGACAGCGGCTTCTCGCAAAGTAATTTAGTGTAGATA
TTCCTAACCTTTTAGTTTGGGTCACCAAACTAAAAATATGCTACTTATGTATAGTTGTTC
TTTGCTGAGCTTGTGATGCAAA



Homology of Contig U35_13728 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g21450.25363e-124protein|expressed protein
Brachypodium v1_2Bradi2g12010.17177e-169
Arabidopsis v10None