barSeed - Barley Seed Development Database

Probe ABC09386

Source Contig ABC09386

barSeed

Links

Affymetrix Source Sequence (2067 bp)

>ABC09386 2067
ACCCTCCGCCGCCGCCTGCTCCCTCTCTCCTCGCCGTTATCCTCCTTCTCCTCCTCCCGC
GTCCGCCTCCTCCTCCCCCGCGCCATGAAGTCCTCCTCCACCGCCACCGCCGCCACGCGG
CACGCAGGTGCCGCGGCGGAGGGGGAGTACGAGGAGGTGCTGGGCCGGCTATCCTCGCTC
ATCACGCAGAAGGTGCGGGCGCACACCGGCAACCGCGGCAACCAGTGGGACCTCATGCAC
CGCTACCTCCAGATTCTCGAGCTGGAGGAGCCCATCGCGAGGATGAAGGTCATACATGTC
GCCGGCACCAAAGGGAAGGGTTCCACATGCACGTTCACCGAGTCAATCCTGCGATCTTGT
GGCTTCCGTACTGGGCTCTTCACTTCACCGCATTTGATGGATGTCCGGGAGCGGTTCCGG
CTAGATGGGGTGGATATTTCCGAAGAGAAGTTTTTGAAGTACTTCTGGAGCTGCTGGAAT
AAATTGAAGGAGAAGACTGATGACGATATTCCCATGCCACCCTATTTCAGGTTCATGGCC
TTGCTCGCATTCAAGATATTTTCTGCTGAGCAGGTAGATGTTGCTCTTCTTGAGGTTGGT
CTTGGAGGGAAGTTTGATGCAACTAATGTGGTTAAAACGCCTGTAGTATGTGGAATATCT
TCTCTTGGATTTGATCATATGGAAATTCTTGGGAATACGCTTGGTGAAATTGCTGGGGAG
AAGGCTGGAATTTTCAAGAAAGGAGTTCCAGCTTATACTGCTCCACAGCCAGAAGAGGCA
ATGATTGCTCTCAGACAAAGAGCTTCAGAATTAGGCATTTCACTCCAAGTCGCTGATCCT
TTGAAGCCACATCAGTTGAAAGATCAACATCTTGGACTGCAAGGTGAACACCAATATGTA
AATGCTGGCCTTGCAGTCGCACTCGCCAGTACATGGCTTGAGAAGCAGGGATACGTGGAC
AGAATGCCACTCAACTGCACTGATCCCTTACCAGATCAGTTCATTAGAGGACTGTCAAGT
GCTTCTTTGCAAGGCCGGGCGCAAATTGTTCGAGATTCACAAGTAAATTCAGAAGAGAAG
GGCCAAGATAGTTCTTTGGTATTCTATTTGGATGGGGCACACAGCCCTGAAAGTATGGAG
ATTTGTGCGAGGTGGTTTTCCCTTGCTACTAAGGATGATAGAAAAGTACCATCTTCTATG
GAGCAGTCTCTGACTTGCAGCAAATCTCGGAAGATTCTTCTGTTCAACTGCATGTCTGTG
AGAGATCCTATGAGATTGCTTCCACATCTTGTCAATACTGCAACTCAAAATGGTGTCCAC
TTTGATCTGGCCCTATTTGTGCCAAACCAGTCACAATACAACAAGCTTGGTTCTAAGGCA
TCAGCACCTGCTGAGCCTGAGCAAATTGATTTGTCATGGCAGCTATCGCTCCAAGCAGTG
TGGGAGAAATTACTTCATGATGATGATAAAGGTTCAAATAGCGCGAATTCTGGCGAGAAT
AGCCAAGTTTTTGAATCACTGCCGCTAGCAATCGAGTGGCTAAGGAAAAATGCCCTAGAA
GACCCATCTACTTCCTACCAGGTCCTGGTTACCGGCTCCTTGCATCTCATCGGCGATGTA
CTGAGGTTGATCAGGAAGTGACACTTTTTTGGAGCACTAGTTACACAGTTGGAAGCTGAC
ATTGAAGTGAAGTAGCCTATACTGATAAATGTGACCCCAGTTAAGCGGGGTCTCTTGACC
ATGTATGGTCCACAGAAACACAGCAGTTTTGAGGTGCTTCGCTCGTGATGCGAATCAGGC
AACAAGAAAAAAACGTGTTGTATATTTTTTTCTCGAGAGGATGGGAGCTCGTTTGTATTT
TTTGTTTTAATAATGCTTTTCTGGCCATTGTTTGCCACTGCATTCTCCTCTCGGTGCATC
CCAGGAAGACGACGAAACTGAGGCGTCGGTCGGGGTGCACGAATAGGTCGACATTGAAAG
TTGTTATCTGAAAAATAACAAGGAAGTTGGTGTCATTGATCTTGTTTTTTTTTACACATG
TAATGCGTGCTTTAAATTCTGAGTGCG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369403	2118	0.0	33 - 522	99	488 / 490	None	ABC09386
MLOC_10980.1	1769	0.0	1 - 1693	90	1559 / 1737	None	ABC09386
MLOC_10980.2	1857	0.0	1 - 495	97	478 / 495	CUST_10704_PI390587928	ABC09386
MLOC_11761.5	2426	0.0	259 - 1775	78	1199 / 1530	CUST_19134_PI390587928 CUST_25537_PI390587928	ABC09386
MLOC_11761.6	2629	0.0	259 - 1775	78	1199 / 1530	CUST_19134_PI390587928 CUST_25537_PI390587928	ABC09386
MLOC_11761.2	3151	0.0	260 - 1776	78	1199 / 1530	CUST_19134_PI390587928 CUST_25537_PI390587928	ABC09386
MLOC_11761.10	2577	0.0	249 - 1765	78	1199 / 1530	CUST_19134_PI390587928	ABC09386
MLOC_11761.11	2181	0.0	1 - 1484	78	1172 / 1496	CUST_19134_PI390587928	ABC09386
MLOC_11761.8	2523	0.0	255 - 1431	79	939 / 1186	CUST_19134_PI390587928	ABC09386
MLOC_11761.7	4658	0.0	259 - 1314	80	846 / 1061	CUST_19134_PI390587928 CUST_25537_PI390587928	ABC09386
MLOC_11761.4	2768	0.0	259 - 1314	80	846 / 1061	CUST_19134_PI390587928 CUST_25537_PI390587928	ABC09386
MLOC_11761.9	2689	0.0	249 - 1304	80	846 / 1061	CUST_19134_PI390587928	ABC09386
MLOC_11761.12	2298	0.0	1 - 1007	79	814 / 1027	CUST_19134_PI390587928	ABC09386
MLOC_11761.3	3870	0.0	260 - 1111	81	689 / 854	CUST_19134_PI390587928 CUST_25537_PI390587928	ABC09386
MLOC_34900.1	492	2e-108	245 - 487	96	241 / 252	None	ABC09386
MLOC_47773.1	467	5e-90	72 - 353	88	251 / 284	None	ABC09386
MLOC_49880.2	452	1e-66	1 - 184	92	169 / 184	None	ABC09386