barSeed - Barley Seed Development Database

Probe CUST_10704_PI390587928

Source Contig U35_18518

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10704_PI390587928	Hv_44K_v2	GTGGAATATCTTCTCTTGGATATGATCATATGGAAATTCTCGGTTAGTCATGGAACTGAC	279	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.076	1.114	2.127	1.588	0.597	0.714
Raw	15.363	21.993	41.568	44.974	6.264	7.867

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10980.2	1857	2e-24	456 - 515	100	60 / 60	plus	ABC09386
Harvest21	ABC09385	355	3e-25	294 - 353	100	60 / 60	plus
Harvest35	U35_18518	342	3e-25	280 - 339	100	60 / 60	plus

Contig Sequence (342 bp)

>U35_18518 342 Hv_44K_v2
CACGTTCACCGAGTCAATCCTGCGATCTTGTGGCTTCCGTACCGGCCTCTTCACCTCACC
GCATTTGATGGATGTCCGCGAGCGGTTCCGGCTGGATGGGGTGGATATTTCTGAAGAGAA
GTTTTTGAACTACTTCTGGAGCTGCTGGAATAAACTGAAGGTTCATGGCCTTGCTCGCAT
TCAAGATATTTTCTGCTGAGCAGGTAGATGTTGCTCTTCTTGAGGTTGGTCTTGGAGGAA
AGTTTGATGCAACTAATGTGGTTAAGACACCTGTAGTCTGTGGAATATCTTCTCTTGGAT
ATGATCATATGGAAATTCTCGGTTAGTCATGGAACTGACAAT

Homology of Contig U35_18518 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g77850.1	565	4e-51
Arabidopsis v10	None