barSeed - Barley Seed Development Database

Probe ABC08931

Source Contig ABC08931

barSeed

Links

Affymetrix Source Sequence (1645 bp)

>ABC08931 1645
GCTCAACTCACGCGCTCTCCTCCTTGCCCCCCAACTTGCCTAACCAAACCTCCACCCCTA
CCAGCCCCAAGCCAGATCTCCACCCATCGCGCCGGAGCCATGGCGTTCGACGCCTTCACC
GACAAGACCGCCGTCTTCCGCCGCCTCAAGGCCAAGCCCGAGAACAAGATGTGCTTCGAC
TGCAACGCCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCTCGAC
TGCTCCGCCTTCCACCGCAGCCTCGGAGTACACATCACATTCGTCAGGTCAACGAACCTG
GACTCATGGACTCCGGATCAGCTAAAGATGATGGCTTTTGGAGGCAACAATCGTGCACAT
GCCTTCTTTAAACAGCATGGGTGGACAGAGGGCAGTGGCAAAGTCGATTCAAAGTACACA
TCAAGGGCTGCTGAATTATACAGGCAGATACTGCAAAAGGAAGTTGCTAAGAGCTCCACC
GTCAACGTCTTGCCATCATCCCCTGTTGCAGCGTCTCAACCAGCTAACCCGTCCGACGAC
TTCCCTGATTTCAAGCTTGCTGATGTACCAGAAGAGAATGCCAACGGGAAGCATGAACAT
GTCGTCACCAATCCACCAAAAGAGCCTGCCCAGGCACCAAAAGTCCCGACACACCCCACT
TATGTCAGTTCTGTAAAGAAGCCCCTTGGTGCAAAGAAGCTTGGTGCCAAGACTGGAGGA
CTTGGTGTAAAAAAGCTCACTACAAAGTCAAATGAAAGCCTGTATGATCAGAAACCTGAA
GAGCCGAAACCTGTTTTACCAACAATGACGACTACTTCAGCTGCAAAAAGTGGCCCATCC
TCGCATTCACGTTTTCAGTATGTGGAAAATGAGACATCAACTGAGTCAAAAACTGGAGGA
GGCAACAAGACTGGCCATGTAGCAGCACCAAAAACCTCAGACTTCTTTCACGAGTATGGA
ATGGATAATGGCTTCCAAAGGAAAACAAACGCAGCTGCCTCAAAGACTCAGATAGAGGAA
ACTGATGAAGCAAGGAAGAAATTTTCGAATGCGAAAGCAATTTCATCATCACAATATTTT
GGGAACACAGACAGAGAACAAAAGGAGGCTCAGTTATCTCTACAGAAATTTTCGGGTTCA
TCATCCATATCAAGCGCTGATCTGTTTGGCCGTGATACAAATGATTCTGATCTGGACGCA
AGTGCTGCAGATCTCATCAACAGAATATCTTTCCAGGCTTCTCAGGATTTATCATCTCTC
AAGAACATGGCCGGAGAAACCGGAAAGAAGCTGACATCTTTTGCCTCGAATTTCATCACC
GACCTCGACAGAATTCTGTGAGGTGTTGATTGGCTGAAATTGTGGGTGTTTCTCTGCACG
CGGAAGTACTGCTCCGAATCGCAGGGCATCTCCGAGTGACTCAAGCATTTCTTGCACAGC
TATGTAGAGAATATTAGGGGGTTGTTACTACTATCATGAATGTGTATCATTCACATTGAT
CGAAATCTTGTTACAATGAAAATATTTTTGCTATTCATTTCATGACAATAGACAAAACAC
ATATGATTTTGTACTTATTCCAGCTTGATGTGCCGTGAAGAAGTTTTTATTGTGGTAAAA
GGGGGGGGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_60310.1	1815	0.0	196 - 1808	100	1613 / 1613	CUST_14722_PI390587928 CUST_14721_PI390587928	ABC05122 ABC08931
AK372189	1553	0.0	2 - 1552	99	1544 / 1551	CUST_14721_PI390587928	ABC05122 ABC08931
MLOC_1886.3	916	0.0	1 - 406	95	387 / 406	None	ABC08931
MLOC_1886.7	879	0.0	1 - 404	95	385 / 404	None	ABC08931
MLOC_1886.6	1006	2e-137	227 - 531	96	292 / 305	None	ABC08931
MLOC_1886.1	760	2e-137	229 - 533	96	292 / 305	None	ABC08931
MLOC_1886.5	1365	2e-137	229 - 533	96	292 / 305	None	ABC08931
MLOC_1886.4	458	2e-82	103 - 287	97	179 / 185	None	ABC08931
MLOC_1886.2	735	2e-82	103 - 287	97	179 / 185	None	ABC08931
AK364999	1544	1e-80	149 - 506	82	297 / 362	None	ABC05122 ABC08931
MLOC_10361.1	1096	1e-80	512 - 869	82	297 / 362	None	ABC05122 ABC08931