barSeed - Barley Seed Development Database

Probe CUST_14722_PI390587928

Source Contig U35_3230

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14722_PI390587928	Hv_44K_v2	TTGTACTTATTCCAGCTTGATGTGCCGTGAAGAAGTTTTTATTGTGGTGTTGCTGCTTTC	1041	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.455	1.487	1.327	0.969	0.336	0.318
Raw	1167.487	1871.633	1438.870	1599.690	204.116	207.547

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60310.1	1815	9e-22	1761 - 1815	100	55 / 55	plus	ABC05122 ABC08931
JLOC1	JLOC1_39316.1	1866	8e-25	1665 - 1724	100	60 / 60	plus
Harvest35	U35_3230	1131	3e-25	1042 - 1101	100	60 / 60	plus

Contig Sequence (1131 bp)

>U35_3230 1131 Hv_44K_v2
CAGGGTCCGACGACTTCCCTGATTTAANGCTTGCTGCTGCACCAGAAGAGAAACCAACGG
GAAGCATGAACCTGTTGTCACCAATCCGCCAAAAGAGCCTGCCCAGGCACCAAAAGCCCC
TACACACCCCACTTATGTCAGTTCTGTAAAGAAGCCCCTTGGTGCAAAGAAGCTTGGTGC
CAAGACTGGAGGACTTGGTGTAAAAAAGCTCACTACAAAGTCAAATGAAAGCCTGTATGA
TCAGAAACCTGAAGAGCCGAAACCTGTTTTACCAACAATGACGACTACTTCAGCTGCAAA
AAGTGGCCCATCCTCGCATTCACGTTTTCAGTATGTGGAAAATGAGACATCAACTGAGTC
AAAAACTGGAGGAGGCAACAAGACTGGCCATGTAGCAGCACCAAAAACCTCAGACTTCTT
TCACGAGTATGGAATGGATAATGGCTTCCAAAGGAAAACAAACGCAGCTGCCTCAAAGAC
TCAGATAGAGGAAACTGATGAAGCAAGGAAGAAATTTTCGAATGCGAAAGCAATTTCATC
ATCACAATATTTTGGGAACACAGACAGAGAACAAAAGGAGGCTCAGTTATCTCTACAGAA
ATTTTCGGGTTCATCATCCATATCAAGCGCTGATCTGTTTGGCCGTGATACAAATGATTC
TGATCTGGACGCAAGTGCTGCAGATCTCATCAACAGAATATCTTTCCAGGCTTCTCAGGA
TTTATCATCTCTCAAGAACATGGCCGGAGAAACCGGAAAGAAGCTGACATCTTTTGCCTC
GAATTTCATCACCGACCTCGACAGAATTCTGTGAGGTGTTGATTGGCTGAAATTGTGGGT
GTTTCTCTGCACGCGGAAGTACTGCTCCGAATCGCAGGGCATCTCCGAGTGACTCAAGCA
TTTCTTGCACAGCTATGTAGAGAATATTAGGGGGTTGTTACTACTATCATGAATGTGTAT
CATTCACATTGATCGAAATCTTGTTACAATGAAAATATTTTTGCTATTCATTTCATGACA
ATAGACAAAACACATATGATTTTGTACTTATTCCAGCTTGATGTGCCGTGAAGAAGTTTT
TATTGTGGTGTTGCTGCTTTCAAAAAAAAAAAAAAAAAANNNAAAAAAAAG

Homology of Contig U35_3230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63710.1	413	2e-97	protein\|GTPase-activating protein, putative, expressed
Brachypodium v1_2	Bradi1g01090.1	413	2e-111
Arabidopsis v10	AT5G46750.1	402	6e-55	\| Symbols: AGD9 \| ARF-GAP domain 9 \| chr5:18969950-18971817 REVERSE LENGTH=402