barSeed - Barley Seed Development Database

Probe ABC08898

Source Contig ABC08898

barSeed

Links

Affymetrix Source Sequence (1491 bp)

>ABC08898 1491
GCTTGTTTAAATATAGACTACCGAGCGACGAGCACCAAACCCCAGCTGCTTCTCGCGCCG
TCTCTCCCGCACCCATCTGGAGCAGTTCGACACGAGGAGAACGCCCGCGCCGCTGCCCCG
AGCCCCGTCGCTGAGGTGGACCATCCTGTTTTAAATTCCTAGATCGGCCACTGCCCAGCT
ACTAGGCCCTAGGGCCGATCCCCTCTGCGGCCGGGCTCACGGAGAAGGGCGCCGCCCCAC
CATGATCGCTGCATTGGCGCGGCAGGTCGCTGCGGCCACTGCTTCCTCCTCCCCGCTCGG
CCGTGTCTCCCAGCTGGCCTCTGCACTGAATCACCAGAGATGGATCCACGACCGGAACAA
GAAGGCTATGGAGCTGGTGGCCAAGGGCTGGAGCGCCCTACAGGAGGTCGATCGCGTCAT
CGACTTCGCCGACCGCAACGACAAGCGATTAATCCCACTTCTCAGGGGCGCGAAGGAGAA
CTTTGAGCTGGCTCTAGAGATCGACAATATGAATACTCATGCCCGATGTTGGCTGGCCAA
GATGCATTTCAAGTACCATGTTCCCGGAGCTTGCAAAGCAATTGGTGCTGCCTTGCTAGT
TGAAGCTGCAAACATGGGTGATCCAGAGGCACAGTATGAACTTGGATGTCGGCTAAGAGT
CGAGAATGATCATGTTCAGTCTGATCAACAGGCCTTCCATTATATAGAGAAAGCTGTTGA
CCAGTTGCATCCTGCTGCTTTGTATCTTCTTGGTGCTGTGTATATAACTGGGGATTGCGT
CAAGAGGGACATAGCTTCAGCTATGTGGTGTTTCCATAGAGCTTCAGAAAAGGGACATGC
TGGAGCTGCAGTTGCATATGGTTCACTTCTTCTGAAAGGTGCTGAAGTGCCTGAAGTCAT
TACCAGGTTCAACTCAGGCAAGAGTCCGTCAACTGGGAAGGTGCGAAAAAGGACCATACA
GCAGGACCCAGTAAAGCTTGCAAAAGAACAGTTCCAGATAGCAGCTGAGTCTGGATCTGA
CCTCGGTTTACGGTGGTTGAAGAGGCTTGGAGATTACGAAAAAGAGCCCCAAGAGCTAAA
GCAAATTCAGCAATGACCTCCAGCCAAAGAATACCACTGCATTGGGCAATTAATTGATGT
TGCAATGCTCTTGCTGCACATTACCAGAGCTTCATGTTTCATCTGCCTTCAGAATGTGGA
GAGAAACCTTTGTTCTATTGTAGGAGCGTTCATGCCAAACTAACTTGTGGTCAACTTGGT
TTGTAGATTAGCGGGTTCATGCCAAACTAACTTGTGGTCAACTTGGTTTGTAGATTAGCA
GGTTGAATCGTACAAACAAATTGATCCCTTTTTTGCCACTAAGGATTTTATCATACTACG
ACAATTATATTGCTGGCTTTACCATGACAATTATACTGTTGGTCTGATTAATTCAGACAA
TAAAATTGCTATTAATGCACTATTTGGAAAAAAAAAAANNAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_76388.1	1971	0.0	1 - 1313	100	1313 / 1313	CUST_3303_PI390587928	ABC08898
MLOC_76388.4	1712	0.0	1 - 1288	100	1288 / 1288	None	ABC08898
MLOC_76388.3	1306	0.0	1 - 1286	100	1286 / 1286	None	ABC08898
MLOC_76388.7	1741	0.0	1 - 1275	100	1275 / 1275	None	ABC08898
MLOC_76388.6	1800	0.0	1 - 1274	100	1274 / 1274	None	ABC08898
MLOC_76388.8	1356	0.0	1 - 1262	100	1262 / 1262	None	ABC08898
MLOC_76388.2	1059	0.0	1 - 956	100	956 / 956	None	ABC08898
MLOC_76388.5	1215	3e-100	916 - 1114	100	199 / 199	None	ABC08898
MLOC_76388.9	1704	9e-111	689 - 906	100	218 / 218	CUST_11192_PI390587928	ABC08898
MLOC_31412.1	260	4e-60	119 - 254	98	133 / 136	None	ABC08898