barSeed - Barley Seed Development Database

Probe CUST_3303_PI390587928

Source Contig U35_4138

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3303_PI390587928	Hv_44K_v2	CGACAATTATATTGCTGGCTTTACCATGACAATTATACTGTTGGTCTGATTAATTCAGAC	1378	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.501	2.513	1.171	0.806	0.240	0.378
Raw	134.914	210.705	87.222	93.372	9.757	17.086

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76388.1	1971	2e-24	11 - 70	100	60 / 60	minus	ABC08898
JLOC1	JLOC1_50938.3	1971	8e-25	1880 - 1939	100	60 / 60	plus
JLOC1	JLOC1_50938.2	1767	8e-25	1676 - 1735	100	60 / 60	plus
JLOC1	JLOC1_50938.1	1545	8e-25	1454 - 1513	100	60 / 60	plus
Harvest21	ABC08898	1491	3e-25	1379 - 1438	100	60 / 60	plus	ABC08898
Harvest35	U35_4138	1491	3e-25	1379 - 1438	100	60 / 60	plus

Contig Sequence (1491 bp)

>U35_4138 1491 Hv_44K_v2
GCTTGTTTAAATATAGACTACCGAGCGACGAGCACCAAACCCCAGCTGCTTCTCGCGCCG
TCTCTCCCGCACCCATCTGGAGCAGTTCGACACGAGGAGGACGCCCGCGCCACTGCCCCG
AGCCCCGTCGCTGAGGTGGACCATCCTGTTTTAAATTCCTAGATCGGCCACTGCCCAGCT
ACTAGGCCCTAGGGCCGATCCCCTCTGCGGCCGGGCTCACGGAGAAGGGCGCCGCCCCAC
CATGATCGCTGCATTGGCGCGGCAGGTCGCTGCGGCCACTGCTTCCTCCTCCCCGCTCGG
CCGTGTCTCCCAGCTGGCCTCTGCACTGAATCACCAGAGATGGATCCACGACCGGAACAA
GAAGGCTATGGAGCTGGTGGCCAAGGGCTGGAGCGCCCTACAGGAGGTCGATCGCGTCAT
CGACTTCGCCGACCGCAACGACAAGCGATTAATCCCACTTCTCAGGGGCGCGAAGGAGAA
CTTTGAGCTGGCTCTAGAGATCGACAATATGAATACTCATGCCCGATGTTGGCTGGCCAA
GATGCATTTCAAGTACCATGTTCCCGGAGCTTGCAAAGCAATTGGTGCTGCCTTGCTAGT
TGAAGCTGCAAACATGGGTGATCCAGAGGCACAGTATGAACTTGGATGTCGGCTAAGAGT
CGAGAATGATCATGTTCAGTCTGATCAACAGGCCTTCCATTATATAGAGAAAGCTGTTGA
CCAGTTGCATCCTGCTGCTTTGTATCTTCTTGGTGCTGTGTATATAACTGGGGATTGCGT
CAAGAGGGACATAGCTTCAGCTATGTGGTGTTTCCATAGAGCTTCAGAAAAGGGACATGC
TGGAGCTGCAGTTGCATATGGTTCACTTCTTCTGAAAGGTGCTGAAGTGCCTGAAGTCAT
TACCAGGTTCAACTCAGGCAAGAGTCCGTCAACTGGGAAGGTGCGAAAAAGGACCATACA
GCAGGACCCAGTAAAGCTTGCAAAAGAACAGTTCCAGATAGCAGCTGAGTCTGGATCTGA
CCTCGGTTTACGGTGGTTGAAGAGGCTTGGAGATTACGAAAAAGAGCCCCAAGAGCTAAA
GCAAATTCAGCAATGACCTCCAGCCAAAGAATACCACTGCATTGGGCAATTAATTGATGT
TGCAATGCTCTTGCTGCACATTACCAGAGCTTCATGTTTCATCTGCCTTCAGAATGTGGA
GAGAAACCTTTGTTCTATTGTAGGAGCGTTCATGCCAAACTAACTTGTGGTCAACTTGGT
TTGTAGATTAGCGGGTTCATGCCAAACTAACTTGTGGTCAACTTGGTTTGTAGATTAGCA
GGTTGAATCGTACAAACAAATTGATCCCTTTTTTGCCACTAAGGATTTTATCATACTACG
ACAATTATATTGCTGGCTTTACCATGACAATTATACTGTTGGTCTGATTAATTCAGACAA
TAAAATTGCTATTAATGCACTATTTGGAAAAAAAAAAANNAAAAAAAAAAA

Homology of Contig U35_4138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10820.1	286	9e-172	protein\|Sel1 repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g07530.2	291	5e-177
Arabidopsis v10	AT2G25570.1	288	1e-123	binding \| chr2:10885881-10887842 REVERSE LENGTH=288