barSeed - Barley Seed Development Database

Probe ABC08894

Source Contig ABC08894

barSeed

Links

Affymetrix Source Sequence (1525 bp)

>ABC08894 1525
GGCCCGATATATTCTCATCCCATGAGGAATTTGAGTCATGGTTTGATTTTTCTGCGAAGG
CTGATGAGGGACTAGAGGAAGAAACTGATGAGAAGAAGAGAGTCCTTATTGTCTCAAAGC
TTCATGCTATTTTGCGCCCTTTCCTTTTAAGGCGGATGAAGGAGAATGTAGAACACATGC
TTCCACGAAAGAAAGAGATAATCATATATGCTAACATGACTGAACATCAGAAGCAAATCC
AGAGTCACTTGATTGAGGAGACATTTGACGACTACTTGCATGAGAGTGCAGATATTGTTT
TGCGAAGGCCCGGCATCAAAACAAAGCTAAATAATCTACTCATTCAGCTGAGAAAAAATT
GTGGCCACCCTGATCTTTTCCATTCTGCTTTTGACTCAAACAGTCTCTATCCACCTGTTG
ATAAGCTTATGGAACAGTGTGGCAAATTTCAGCTGTTGGACAGGTTGCTGGATGCTTTAA
TCAAACGAAATCACAAGGTCCTAATATTTTCGCAATGGACAAAGATCTTGGACATCCTTG
ACTATTATTTGTCTGAGAAAGGCCTGAAGGTTTGCCGGATTGATGGTAGTGTTAAGTTGG
AAGACAGGAGGAACCAGATAGCAGCGTTTAATGACTTAAACAGTGGTATGAATGTATTCA
TTCTCAGCACACGTGCTGGCGGGCTTGGTATCAACCTTACTTCTGCTGATACTTGTATCC
TGTATGATAGTGACTGGAATCCTCAGATGGATTTGCAGGCTATGGATCGATGCCACCGTA
TTGGCCAAACACAGCCAGTTCATGTTTATCGGTTGGCGACATCCAATTCTGTTGAGGGAC
GGATTATCAAGAAAGCTTTTGGAAAGTTGAAGCTAGAGCACGTCGTGATTGGGAAGGGAC
AGTTCCAGCAAGATGCCGCGAAGCCTAATGCCTTAGATGAGGGAGAGCTGCTGGCGCTTC
TGAGGGACGAGCAGGACGAGGAAGACAGGATGATCCAGACAGACATCAGCGACGAGGACC
TCCTGAAGGTGATGGACCGGAGGGACCTCACCGGTGCGCGTGCGGCTGCTGATGCCGTCC
CGCACTTCCCCCTGAAAGGGCCTGGCTGGGAGGTCGTGTTGGCTGCTGGCGGCGGCATGC
TCTCGACGCTCACCAGCTGAGCCAACCTCGTGCGGGCGGCAGGCCTGGCGCCTGACGACC
ACACCGACACCCTCCAGTGTTTTTGTGTTCGCCGCCTGTGTTTTTGTGACATGATGTGGA
CATGTCAAAGGCCTATCCCCCCTAAGTAATTATGGACGACAGGGCGTTGCAGTGTATACC
GCACCCCCTAGATTAGGAGCTGATCGATCCTTTGGCGAGCTGTGTTGCGATGTAACTCGA
GCTCGTGCCTTCATCCAAGGCAACCACCCTAGTAGCTATGTTAAGACTGTTATGGTAGTA
GTAGTCTGCTGAAGGAGTCTGGAAATGAGACTGTTACTCCAGTATGCAATGCTGTGTCTT
TTCTTGGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_64588.1	3260	0.0	36 - 1542	99	1506 / 1507	CUST_21972_PI390587928	ABC08894
MLOC_64588.2	2634	0.0	1 - 1489	99	1488 / 1489	CUST_21972_PI390587928	ABC08894
MLOC_64588.3	2871	0.0	1 - 1481	99	1480 / 1481	CUST_21972_PI390587928	ABC08894
MLOC_57435.2	1417	0.0	1 - 1126	87	986 / 1132	None	ABC08894
MLOC_61394.1	712	0.0	49 - 712	87	575 / 664	None	ABC08894
MLOC_57435.1	1425	0.0	845 - 1422	88	508 / 580	None	ABC08894
MLOC_57435.3	980	9e-176	314 - 873	87	490 / 564	None	ABC08894
MLOC_61395.3	1914	3e-145	1 - 496	86	425 / 497	CUST_4466_PI390587928	ABC08894
MLOC_61395.2	1962	6e-123	1 - 432	85	369 / 433	CUST_4466_PI390587928	ABC08894
MLOC_61395.1	1837	6e-123	1 - 432	85	369 / 433	CUST_4466_PI390587928	ABC08894