barSeed - Barley Seed Development Database

Probe CUST_21972_PI390587928

Source Contig U35_16443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21972_PI390587928	Hv_44K_v2	CTGTTATGGTAGTAGTAGTCTGCTGAAGGAGTCTGGAAATGAGACTGTTACTCCAGTAAA	2874	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.530	1.763	1.434	0.787	0.282	0.305
Raw	9742.147	17840.543	12516.410	10886.830	1335.800	1586.967

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64588.2	2634	2e-23	7 - 64	100	58 / 58	minus	ABC08894
MLOC	MLOC_64588.1	3260	2e-23	60 - 117	100	58 / 58	minus	ABC08894
MLOC	MLOC_64588.3	2871	3e-22	1 - 56	100	56 / 56	minus	ABC08894
JLOC1	JLOC1_42427.1	3147	1e-23	2976 - 3033	100	58 / 58	plus
Harvest21	ABC08894	1525	4e-24	1427 - 1484	100	58 / 58	plus	ABC08894
Harvest35	U35_16443	2949	3e-25	2875 - 2934	100	60 / 60	plus

Contig Sequence (2949 bp)

>U35_16443 2949 Hv_44K_v2
TACTCCCCCTCAGTAAAAACGCGCACAGCATCCTCCGGAAGCGCTCCTTCCTCCGTCGCC
GCCGCCACTCCCTCTGGTCTCCACCACCGCCGCTCGCCGCCAACTCCGCCGCAGCAGGGA
CTGCTGCATGACGCCTCGACCCCACCGACACTCGGCGACGTCGCCGCCTGTTGCCGCCGC
GGCCGAGATGGTGGTCGCCAGGGCGAATGGGGCGAAGAGGGAAGCAGCCGCCGCCGCCGC
CGCCGCCAACACCACCGCTGCCGCCGACGCCGACCCAGATTCTCCTATCTCCGTTCTGGG
GGAAGAGAAAATGTCCGGATCCAAGGATGGGAAAGCTGGCGAGCTCAAGGCCAACGGTGG
CGAGGCGCATCCCATCGACGGGGCGCTGAAGGCTGAAGAACTGCTGCTCAACTCTGTCAA
AGAGGAGACATCGTTTGAGCTCGTGGCCAAGAACGGCGATACCTCTTTAATCACAGAGGT
GATGACCAAGGAGGAAGAGGAGATGTATCAGGCCCGGATTAAGTTAGAGGAGGAAGAGGA
GGCCAGAAAGAGAGAGGAGGCCGCGAGGCAGGCCTTTGACCCAAAGGCAAAGTTCAACAA
GCTGGATGAGCTGCTGACACAGACACAGCTCTATTCTGAATTCTTGCTTGAGAAGATGGA
GCAGATCACAGATGTTAAGCCGACTGCTGTTGAAATTAAAGACGAGGAGGAACCCGTGGA
AGAGCAAAAGAAAGGACGTGGCAAAAAGAGGAAAGCGGCCAAGGCACAGTACAATGACAA
GAAGGCTAAAACTGCAGTGGCAGCCATGCTTACAAGATCTCGTGAAGATCGTTCTGCTGA
TGATGGTACTCTCACGGAAGAAGAAAAGTGGGAAAGAGAGCAAGCCAATCTTGTTCCATT
GTTGACTGGGGGAAAGTTGAAATCTTACCAGATAAAGGGTGTTAAGTGGCTAATATCACT
GTGGCAAAATGGGCTGAATGGGATACTTGCTGATCAAATGGGCCTTGGGAAAACAATCCA
GACAATTGCATTTCTTGCTCATCTTAAAGGGAATGGTCTGCATGGTCCATACATGGTTAT
TGCTCCCCTTTCCACCCTGTCAAACTGGTTGAACGAGTTAATGAGGTTCACTCCATCTCT
AAATGGTCTGATTTATCATGGAGATAAAGCTGCTCGGACAGAGCTAAGGAGAAAATACAT
GCCCAAAACTGTTGGTCCTGATTTTCCGATAATAATCACTTCATATGAGATGGCCATGTT
TGATGCAAAGTTTCTTGCTAATTATAAGTGGAAGTATGTTGTTGTAGATGAGGGGCATCG
GTTGAAAAATACGAAGTGCAAATTACTGAGGGAGTTGAGGCGCATTCCAATGGATAACAA
GCTCCTTTTGACTGGAACACCTCTTCAGAATAATCTAGCAGAGCTGTGGTCGCTATTGAA
CTTCATTTTGCCAGATATATTCTCATCCCATGAGGAATTTGAGTCATGGTTTGATTTTTC
TGCGAAGGCTGATGAGGGACTAGAGGAAGAAACTGATGAGAAGAAGAGAGTCCTTATTGT
CTCAAAGCTTCATGCTATTTTGCGCCCTTTCCTTTTAAGGCGGATGAAGGAGAATGTAGA
ACACATGCTTCCACGAAAGAAAGAGATAATCATATATGCTAACATGACTGAACATCAGAA
GCAAATCCAGAGTCACTTGATTGAGGAGACATTTGACGACTACTTGCATGAGAGTGCAGA
TATTGTTTTGCGAAGGCCCGGCATCAAAACAAAGCTAAATAATCTACTCATTCAGCTGAG
AAAAAATTGTGGCCACCCTGATCTTTTCCATTCTGCTTTTGACTCAAACAGTCTCTATCC
ACCTGTTGATAAGCTTATGGAACAGTGTGGCAAATTTCAGCTGTTGGACAGGTTGCTGGA
TGCTTTAATCAAACGAAATCACAAGGTCCTAATATTTTCGCAATGGACAAAGATCTTGGA
CATCCTTGACTATTATTTGTCTGAGAAAGGCCTGAAGGTTTGCCGGATTGATGGTAGTGT
TAAGTTGGAAGACAGGAGGAACCAGATAGCAGCGTTTAATGACTTAAACAGTGGTATGAA
TGTATTCATTCTCAGCACACGTGCTGGCGGGCTTGGTATCAACCTTACTTCTGCTGATAC
TTGTATCCTGTATGATAGTGACTGGAATCCTCAGATGGATTTGCAGGCTATGGATCGATG
CCACCGTATTGGCCAAACACAGCCAGTTCATGTTTATCGGTTGGCGACATCCAATTCTGT
TGAGGGACGGATTATCAAGAAAGCTTTTGGAAAGTTGAAGCTAGAGCACGTCGTGATTGG
GAAGGGACAGTTCCAGCAAGATGCCGCGAAGCCTAATGCCTTAGATGAGGGAGAGCTGCT
GGCGCTTCTGAGGGACGAGCAGGACGAGGAAGACAGGATGATCCAGACAGACATCAGCGA
CGAGGACCTCCTGAAGGTGATGGACCGGAGGGACCTCACCGGTGCGCGTGCGGCTGCTGA
TGCCGTCCCGCACTTCCCCCTGAAAGGGCCTGGCTGGGAGGTCGTGTTGGCTGCTGGCGG
CGGCATGCTCTCGACGCTCACCAGCTGAGCCAACCTCGTGCGGGCGGCAGGCCTGGCGCC
TGACGACCACACCGACACCCTCCAGTGTTTTTGTGTTCGCCGCCTGTGTTTTTGTGACAT
GATGTGGACATGTCAAAGGCCTATCCCCCCTAAGTAATTATGGACGACAGGGCGTTGCAG
TGTATACCGCACCCCCTAGATTAGGAGCTGATCGATCCTTTGGCGAGCTGTGTTGCGATG
TAACTCGAGCTCGTGCCTTCATCCAAGGCAACCACCCTAGTAGCTATGTTAAGACTGTTA
TGGTAGTAGTAGTCTGCTGAAGGAGTCTGGAAATGAGACTGTTACTCCAGTAAAAAAAAA
AAAAAAAAA

Homology of Contig U35_16443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g51230.1	850	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g10360.1	825
Arabidopsis v10	AT5G66750.1	764	\| Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 \| chromatin remodeling 1 \| chr5:26649050-26652869 FORWARD LENGTH=764