barSeed - Barley Seed Development Database

Probe ABC08866

Source Contig ABC08866

barSeed

Links

Affymetrix Source Sequence (1473 bp)

>ABC08866 1473
GTATCTCTCATCTCCCTTCTGACCTACCCAAGCTCCAGTCCACCGCCGCTGTGCCCTAGA
ACTGCGCCGCGCCCGCCCTCTGTCCCTCACGCGCCTCGTCGCCGGCGCCCTCCCTGTCCC
GTAGCGTCCCCGCTCTCTCCTCCCCACCCGCAATCTTGGACTTCGGTTTTGAGATCTGCC
CCTGCTATCGATTGCAGGTTTGCAGAGGGCTCGTCGACATGTCTTGGGCGCCAATCGAGA
ATGACCCTGGTGTTTTTACGGAGCTGTTGCAACAGTTGCAGTTGAAGGGTCTCCAAGTTG
ATGAACTCTACTCACTTGATCTTGATGCCCTAAATGATCTTCAGCCAATTTATGGGCTTA
TATTATTGTACAAATGGCGACCTCCAGAAAAAGATGAGCGCCCTGTTATCAAGGATGCGG
TCCCAAATGTATTCTTTGCTAATCAGATAATTAACAGCGCATGTGCAACCCAAGCTATTG
TTTCTGTTCTGTTGAACTCTTCTGGCATCACCCTTAGCGAGGACCTCAAAAAGCTCAAGG
AGTTTGCAAAGGACATGCCGCCGGAGCTCAAAGGATTGGCTATAGTGAATTGTGAAAGCA
TTCGTATAACCAGTAACTCGTTTGCAAGGTCAGATGACTACTCTGAGGAACAGAAATCCA
AGGATGATGATGTCTACCATTTCATTAGCTATGTTCCTGTTGACGGTGTCCTGTATGAGC
TTGATGGACTAAAGGAAGGACCGATTAGCCTGGGAAAATGCCCAGGTGGCATTGGGGAGA
TGGGGTGGCTGAAGATGGTGCAGCCTGTCATCCAGGAACGCATCGATAAGTTCTCTCAGA
ATGAGATAAGGTTCAGTGTCATGGCTATCACAAAGAACCGGAAGGAAATTTTCATCATGG
AGCTCAAGGAACTTCAGAGGAAGAGGGAGAACCTCTTGTCACAAATGGGTGATCCTTCTG
CCAATCGGCAAAGGCCATCCGTTGAGCGATCACTCGCAGAGGTTGCTGCTCAGATTGAGG
CTGTGACTGAGAAGATCATAATGGAGGAAGAGAAGGCAAAGAAGTGGAAGACGGAGAACA
TCAGGAGGAAGCACAACTACGTGCCTTTCTTGTTCAATTTCCTCAAGATCCTCGAGGAGA
AGCAGCAACTGAAGCCCCTGATAGAGAAGGCGAAACAGAATTCTCACGGCCGTAACCCTA
AGTGAAACCTGCGTTGTAAAATTTTATCGTCTTGGTTGTTTTGGTTTTGTGTAGAGATGG
CTGACTGGCTTTGTTTCCTAGCCGAATGTGCCTTGTAGTTCTAGTCCTAGACAGGCCATA
TATCGATACCGTCCTGGTTTATTCAGGCAGATCTTAAAACATTCATATAGGGGGAACACC
CTGACTCCTTATCAGAATTATGTGCATCAGAGGGCTGTTTCCCTGTCTAATTCTTCCCAA
ACTTTAACTANAAGTTTACCAATCAAGGCAGTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373728	1388	0.0	3 - 1388	100	1386 / 1386	CUST_24186_PI390587928	ABC08866 ABC49253
AK372981	2661	1e-59	2 - 127	100	126 / 126	CUST_24186_PI390587928 CUST_24187_PI390587928	ABC08866 ABC49253
MLOC_67335.1	564	0.0	1 - 558	99	554 / 558	CUST_24187_PI390587928	ABC08866 ABC49253
MLOC_43005.1	583	0.0	1 - 504	97	488 / 504	None	ABC08866 ABC41309 ABC49253
MLOC_30829.1	360	5e-163	1 - 360	96	344 / 360	None	ABC08866
MLOC_30834.1	254	4e-129	1 - 254	99	253 / 254	CUST_24186_PI390587928	ABC08866
MLOC_30829.2	244	3e-111	2 - 244	97	235 / 243	None	ABC08866
MLOC_30834.2	329	2e-108	116 - 329	100	214 / 214	CUST_24186_PI390587928 CUST_31165_PI390587928	ABC08866
MLOC_41464.2	274	1e-84	1 - 186	97	181 / 186	None	ABC08866
MLOC_41464.1	411	2e-82	1 - 183	97	178 / 183	None	ABC08866
MLOC_35552.1	233	2e-67	70 - 233	95	156 / 164	None	ABC08866
MLOC_27403.2	523	7e-67	1 - 145	99	143 / 145	CUST_24186_PI390587928	ABC08866
MLOC_27403.1	390	1e-65	230 - 378	97	146 / 150	CUST_24186_PI390587928	ABC08866
MLOC_27017.1	319	1e-65	183 - 319	100	137 / 137	None	ABC08866