barSeed - Barley Seed Development Database

Probe CUST_24187_PI390587928

Source Contig U35_18456

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24187_PI390587928	Hv_44K_v2	AAACATTCATATAGGGGGAACACCCTGACTCCTTATCAGAATTATGTGCATCAGAAAAAA	1356	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.485	1.450	1.011	0.892	0.453	0.569
Raw	3057.000	4536.217	2847.013	3894.250	702.775	958.062

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372981	2661	9e-22	2558 - 2612	100	55 / 55	plus	ABC08866 ABC49253
MLOC	MLOC_67335.1	564	9e-22	442 - 496	100	55 / 55	plus	ABC08866 ABC49253
JLOC1	JLOC1_44450.1	563	5e-22	442 - 496	100	55 / 55	plus
Harvest21	ABC08866	1473	2e-22	1357 - 1411	100	55 / 55	plus	ABC08866
Harvest35	U35_18456	1473	3e-25	1357 - 1416	100	60 / 60	plus

Contig Sequence (1473 bp)

>U35_18456 1473 Hv_44K_v2
GTATCTCTCATCTCCCTTCTGACCTACCCAAGCTCCAGTCCACCGCCGCTGTGCCCTAGA
ACTGCGCCGCGCCCGCCCTCTGTCCCTCACGCGCCTCGTCGCCGGCGCCCTCCCTGTCCC
GTAGCGTCCCCGCTCTCTCCTCCCCACCCGCAATCTTGGACTTCGGTTTTGAGATCTGCC
CCTGCTATCGATTGCAGGTTTGCAGAGGGCTCGTCGACATGTCTTGGGCGCCAATCGAGA
ATGACCCTGGTGTTTTTACGGAGCTGTTGCAACAGTTGCAGTTGAAGGGTCTCCAAGTTG
ATGAACTCTACTCACTTGATCTTGATGCCCTAAATGATCTTCAGCCAATTTATGGGCTTA
TATTATTGTACAAATGGCGACCTCCAGAAAAAGATGAGCGCCCTGTTATCAAGGATGCGG
TCCCAAATGTATTCTTTGCTAATCAGATAATTAACAGCGCATGTGCAACCCAAGCTATTG
TTTCTGTTCTGTTGAACTCTTCTGGCATCACCCTTAGCGAGGACCTCAAAAAGCTCAAGG
AGTTTGCAAAGGACATGCCGCCGGAGCTCAAAGGATTGGCTATAGTGAATTGTGAAAGCA
TTCGTATAACCAGTAACTCGTTTGCAAGGTCAGATGACTACTCTGAGGAACAGAAATCCA
AGGATGATGATGTCTACCATTTCATTAGCTATGTTCCTGTTGACGGTGTCCTGTATGAGC
TTGATGGACTAAAGGAAGGACCGATTAGCCTGGGAAAATGCCCAGGTGGCATTGGGGAGA
TGGGGTGGCTGAAGATGGTGCAGCCTGTCATCCAGGAACGCATCGATAAGTTCTCTCAGA
ATGAGATAAGGTTCAGTGTCATGGCTATCACAAAGAACCGGAAGGAAATTTTCATCATGG
AGCTCAAGGAACTTCAGAGGAAGAGGGAGAACCTCTTGTCACAAATGGGTGATCCTTCTG
CCAATCGGCAAAGGCCATCCGTTGAGCGATCACTCGCAGAGGTTGCTGCTCAGATTGAGG
CTGTGACTGAGAAGATCATAATGGAGGAAGAGAAGGCAAAGAAGTGGAAGACGGAGAACA
TCAGGAGGAAGCACAACTACGTGCCTTTCTTGTTCAATTTCCTCAAGATCCTCGAGGAGA
AGCAGCAACTGAAGCCCCTGATAGAGAAGGCGAAACAGAATTCTCACGGCCGTAACCCTA
AGTGAAACCTGCGTTGTAAAATTTTATCGTCTTGGTTGTTTTGGTTTTGTGTAGAGATGG
CTGACTGGCTTTGTTTCCTAGCCGAATGTGCCTTGTAGTTCTAGTCCTAGACAGGCCATA
TATCGATACCGTCCTGGTTTATTCAGGCAGATCTTAAAACATTCATATAGGGGGAACACC
CTGACTCCTTATCAGAATTATGTGCATCAGAAAAAAAAAAAAAAGTCTAATTCTTCCCAA
ACTTTAACTANAAGTTTACCAATCAAGGCAGTT

Homology of Contig U35_18456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08370.1	330	2e-176	protein\|ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Brachypodium v1_2	Bradi3g06000.1	328	0.0
Arabidopsis v10	AT1G65650.1	330	4e-128	\| Symbols: UCH2 \| Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 \| chr1:24415172-24417466 REVERSE LENGTH=330