barSeed - Barley Seed Development Database

Probe ABC08713

Source Contig ABC08713

barSeed

Links

Affymetrix Source Sequence (2428 bp)

>ABC08713 2428
CCACCCCGCTATGGATGGATGGATGGATTTGCTGCTTATTTGTTAGATGGATGGATGGAT
GGATTTGCTGCTTATTTGTTAGATGGATGGATGAATTTGCTGCTTATTTGTTAGATGGAT
GGATGAATTTGCTTCTATCTAAGGGCAGTACAGACATTTCAACACACAACACTTTCCAGA
ATCTCAAACTACAATCTCTGAAAAGAACTCGACCACAGATTCTGGGAGAAGCAGATTCTG
GGAGAATTTTCCATAATCCTGATTCTCTAGAATCCAGGGTGAAAAGAACTGGGCCCTCCT
CTCGCTAAACCAGATCGGATCGAGGGCTACATCGTCGAGGGGCTCCACCAGATCGAGGGC
TGCGCCGCCGGGGGGGCTCCACCGGATCGAGGGTTGCGCCGCTGGATCGGATAGAGGGCG
CCACCGGGTCGAGACGGACGAAGCAACGACAGAGGCTCCTGACCTCGACGGAGGATCGCT
GCTGACCTCGACGGAGACTCCCTCCTCCAACCGCGACGGCGACTCCCTCCTCCTCCTCCA
CGGCTCGCTCCTTACCTCGACGGAGGGTCGCTCCTGATCTTGACGAAGGCTCTCTGCTGA
CCTCGACGGACACTCCCTCCTCCAACCGCGACGGCGACTCCCTCCTCCTCCTCCACGGCC
TCCTCTGCTCCATCGAAGCGCGAAGGACACAATCAAGAACGGGAAGCCGCGACCAGGACG
GACATCAGCTCCTTCTTTGGTGACTTTCCCCTCAGCTAGGCTGCAGGGTCACCCACTAGA
ACGGATCCTGGGAAAATGGTGCTCACCCTTCTCCCAACCTTATCATTGCCGGTTTCACGG
GCCACTGCATTCCTCCTCGGAACCCCACTAAAATCCTTCCGGTCTCACCATCCACTTCTA
CGCAGCCTCCTCGCTTCTGCTTCTTCCCTATCAGCCCCTCCTACTGCCCGCTCCCTCATC
ACTATGGCCTCCGCGTCTATTCCTGCCCGCCGGGACCTCCTCATGCTCGGCATTGAGACC
AGTTGCGACGATACTGCCGCCGCTGTGGTCAGAGGCGATGGGGAGATCCTTAGCCAAGTG
ATTGCTTCCCAATCAGATTTGCTTGTGAAATGGGGCGGTGTTGCTCCTAAGATGGCCGAA
GAAGCTCATGCTCTTGCAATTGATCAGGTTGTTCAGAAAGCACTCGATGACGCAAATGTG
TCAGAGAGTGATCTTTCTGCTGTGGCTGTGACCATTGGACCAGGACTTAGTCTATGCCTT
AGAGTTGGTGTTCACAAAGCTCGAAACATAGCAAAAGTATTTCGCTTGCCTATTGTTGGA
GTTCACCATATGGAGGCGCATGCATTAGTTTCCAGGCTAGTGAACAAGAACCTTGATTAC
CCGTTTTTGGCTCTTCTAATTTCAGGAGGACACAATCTTCTTGTTCTTGCTCAGAACCTC
GGCGAGTATGTTCAACTGGGGACTACTATAGACGATGCAATTGGTGAGGCATATGACAAG
TCAGCAAGATGGCTGGGTCTTGATATACGGAAAGGTGGTGGTCCTGCTCTTGAAGAGCTT
GCCCTAGAAGGCGATCCAAATTCTATTAATTTCAGAGTTCCGATGCGACAACACAAAGAT
TGCAATTTCTCCTATGCTGGTCTCAAGACTCAAGTTCGATTAGCCATTGAATCCAGAAAT
CTGCGCACAGATGATATCCCCATTTCTTCTGCAACAGAGGAAGACAGGCAACTAAGGGCA
AACATTGCTGCCTCTTTTCAGCGGATAGCTGTTCTACATTTGGAGGATAGATGCCAGCGA
GCAGTTGAATGGGCATTGAAGCTGGAGCCTTCTATTAAACACTTTGTTGTTTCAGGTGGT
GTTGCATCGAACCAGTATGTTAGGGCCCGCTTGAATGATATTGCTGAGAAGAATGGCCTA
CAGCTTGTATCCCCTCCACCAAGTCTTTGTACTGACAATGGTGTCATGATTGCTTGGACT
GGAATCGAGCACTTTGTTGCCGGTAGATTTGAAGATCCACCTCTGGCAGATGAGCCTGAT
GATATGCAGTACGACTTGCGTCCAAGATGGCCTCTTGGCGAAGAATATGCAGAAGGAAGA
AGTGTTTCACGATCATTGAAAACAGCTAGGATCCATCCATCACTTACATCCATGACGCAG
AGCTCTCTCCGCAGCTAGTTTGTTGAGACCATCCATCTTGGCCGCTTGCTGCCATTGAGT
TCCACATCGACTTTATTTTGTCATTGCAGTAATTAGCTGCAAAGGCTTGAGCTGATTAGC
TGTTCATTAGTTCAGTGTACATCTGAGAAGCAATAAACCAGCCCTGTTCATGTACAAGTT
GTTTACGGCTCCATGACTCGATACTTGAATCTGTATCATATTTATACATACAAGGTACTT
CCTCCGATCCGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373528	2528	0.0	188 - 2485	99	2292 / 2299	CUST_21731_PI390587928	ABC08713 ABC25635
MLOC_69901.1	1750	0.0	1 - 1750	100	1750 / 1750	None	ABC08713
MLOC_69901.2	1746	0.0	1 - 1746	99	1746 / 1750	None	ABC08713
MLOC_69901.6	1409	0.0	1 - 1409	99	1396 / 1409	None	ABC08713
MLOC_69901.5	1690	3e-53	1576 - 1690	100	115 / 115	None	ABC08713
MLOC_69901.4	1933	0.0	1570 - 1933	100	364 / 364	None	ABC08713
MLOC_69901.3	1047	0.0	1 - 1044	100	1044 / 1044	None	ABC08713
MLOC_18597.1	292	3e-127	3 - 292	95	276 / 290	None	ABC08713
MLOC_36057.1	228	1e-115	2 - 228	100	227 / 227	None	ABC08713 ABC25635
MLOC_30705.1	316	5e-56	1 - 120	100	120 / 120	None	ABC08713 ABC25635
MLOC_35052.1	1681	2e-85	1 - 187	97	181 / 187	None	ABC08713 ABC10657 ABC25635
MLOC_9303.1	196	5e-56	65 - 187	99	122 / 123	None	ABC08713
MLOC_73284.1	206	2e-54	44 - 166	98	121 / 123	None	ABC08713
MLOC_42313.1	146	2e-54	3 - 122	99	119 / 120	None	ABC08713
MLOC_3957.1	368	2e-54	252 - 368	100	117 / 117	None	ABC08713 ABC25635