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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_21731_PI390587928Hv_44K_v2CTCGATACTTGAATCTGTATCATATTTATACATACAAGGTACTTCCTCCGATCCGAAAAA2356GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2421.3651.0690.8320.3260.345
Raw 496.610835.267586.741722.43998.384114.444



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37352825287e-232429 - 248510057 / 57plus ABC08713 ABC25635
JLOC1JLOC1_46349.819104e-231717 - 177310057 / 57plus
JLOC1JLOC1_46349.717984e-231605 - 166110057 / 57plus
JLOC1JLOC1_46349.619014e-231708 - 176410057 / 57plus
JLOC1JLOC1_46349.517904e-231597 - 165310057 / 57plus
JLOC1JLOC1_46349.419204e-231727 - 178310057 / 57plus
JLOC1JLOC1_46349.317964e-231603 - 165910057 / 57plus
JLOC1JLOC1_46349.218064e-231613 - 166910057 / 57plus
JLOC1JLOC1_46349.118024e-231609 - 166510057 / 57plus
Harvest21ABC0871324283e-252357 - 241610060 / 60plusABC08713
Harvest35U35_362024283e-252357 - 241610060 / 60plus



Contig Sequence (2428 bp)

>U35_3620 2428 Hv_44K_v2
CCACCCCGCTATGGATGGATGGATGGATTTGCTGCTTATTTGTTAGATGGATGGATGGAT
GGATTTGCTGCTTATTTGTTAGATGGATGGATGAATTTGCTGCTTATTTGTTAGATGGAT
GGATGAATTTGCTTCTATCTAAGGGCAGTACAGACATTTCAACACACAACACTTTCCAGA
ATCTCAAACTACAATCTCTGAAAAGAACTCGACCACAGATTCTGGGAGAAGCAGATTCTG
GGAGAATTTTCCATAATCCTGATTCTCTAGAATCCAGGGTGAAAAGAACTGGGCCCTCCT
CTCGCTAAACCAGATCGGATCGAGGGCTACATCGTCGAGGGGCTCCACCAGATCGAGGGC
TGCGCCGCCGGGGGGGCTCCACCGGATCGAGGGTTGCGCCGCTGGATCGGATAGAGGGCG
CCACCGGGTCGAGACGGACGAAGCAACGACAGAGGCTCCTGACCTCGACGGAGGATCGCT
GCTGACCTCGACGGAGACTCCCTCCTCCAACCGCGACGGCGACTCCCTCCTCCTCCTCCA
CGGCTCGCTCCTTACCTCGACGGAGGGTCGCTCCTGATCTTGACGAAGGCTCTCTGCTGA
CCTCGACGGACACTCCCTCCTCCAACCGCGACGGCGACTCCCTCCTCCTCCTCCACGGCC
TCCTCTGCTCCATCGAAGCGCGAAGGACACAATCAAGAACGGGAAGCCGCGACCAGGACG
GACATCAGCTCCTTCTTTGGTGACTTTCCCCTCAGCTAGGCTGCAGGGTCACCCACTAGA
ACGGATCCTGGGAAAATGGTGCTCACCCTTCTCCCAACCTTATCATTGCCGGTTTCACGG
GCCACTGCATTCCTCCTCGGAACCCCACTAAAATCCTTCCGGTCTCACCATCCACTTCTA
CGCAGCCTCCTCGCTTCTGCTTCTTCCCTATCAGCCCCTCCTACTGCCCGCTCCCTCATC
ACTATGGCCTCCGCGTCTATTCCTGCCCGCCGGGACCTCCTCATGCTCGGCATTGAGACC
AGTTGCGACGATACTGCCGCCGCTGTGGTCAGAGGCGATGGGGAGATCCTTAGCCAAGTG
ATTGCTTCCCAATCAGATTTGCTTGTGAAATGGGGCGGTGTTGCTCCTAAGATGGCCGAA
GAAGCTCATGCTCTTGCAATTGATCAGGTTGTTCAGAAAGCACTCGATGACGCAAATGTG
TCAGAGAGTGATCTTTCTGCTGTGGCTGTGACCATTGGACCAGGACTTAGTCTATGCCTT
AGAGTTGGTGTTCACAAAGCTCGAAACATAGCAAAAGTATTTCGCTTGCCTATTGTTGGA
GTTCACCATATGGAGGCGCATGCATTAGTTTCCAGGCTAGTGAACAAGAACCTTGATTAC
CCGTTTTTGGCTCTTCTAATTTCAGGAGGACACAATCTTCTTGTTCTTGCTCAGAACCTC
GGCGAGTATGTTCAACTGGGGACTACTATAGACGATGCAATTGGTGAGGCATATGACAAG
TCAGCAAGATGGCTGGGTCTTGATATACGGAAAGGTGGTGGTCCTGCTCTTGAAGAGCTT
GCCCTAGAAGGCGATCCAAATTCTATTAATTTCAGAGTTCCGATGCGACAACACAAAGAT
TGCAATTTCTCCTATGCTGGTCTCAAGACTCAAGTTCGATTAGCCATTGAATCCAGAAAT
CTGCGCACAGATGATATCCCCATTTCTTCTGCAACAGAGGAAGACAGGCAACTAAGGGCA
AACATTGCTGCCTCTTTTCAGCGGATAGCTGTTCTACATTTGGAGGATAGATGCCAGCGA
GCAGTTGAATGGGCATTGAAGCTGGAGCCTTCTATTAAACACTTTGTTGTTTCAGGTGGT
GTTGCATCGAACCAGTATGTTAGGGCCCGCTTGAATGATATTGCTGAGAAGAATGGCCTA
CAGCTTGTATCCCCTCCACCAAGTCTTTGTACTGACAATGGTGTCATGATTGCTTGGACT
GGAATCGAGCACTTTGTTGCCGGTAGATTTGAAGATCCACCTCTGGCAGATGAGCCTGAT
GATATGCAGTACGACTTGCGTCCAAGATGGCCTCTTGGCGAAGAATATGCAGAAGGAAGA
AGTGTTTCACGATCATTGAAAACAGCTAGGATCCATCCATCACTTACATCCATGACGCAG
AGCTCTCTCCGCAGCTAGTTTGTTGAGACCATCCATCTTGGCCGCTTGCTGCCATTGAGT
TCCACATCGACTTTATTTTGTCATTGCAGTAATTAGCTGCAAAGGCTTGAGCTGATTAGC
TGTTCATTAGTTCAGTGTACATCTGAGAAGCAATAAACCAGCCCTGTTCATGTACAAGTT
GTTTACGGCTCCATGACTCGATACTTGAATCTGTATCATATTTATACATACAAGGTACTT
CCTCCGATCCGAAAAAAAAAAAAAAAAA



Homology of Contig U35_3620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g29990.14620.0protein|O-sialoglycoprotein endopeptidase, putative, expressed
Brachypodium v1_2Bradi2g11360.14620.0
Arabidopsis v10AT2G45270.14800.0| Symbols: GCP1 | glycoprotease 1 | chr2:18666583-18669332 FORWARD LENGTH=480