barSeed - Barley Seed Development Database

Probe ABC08641

Source Contig ABC08641

barSeed

Links

Affymetrix Source Sequence (1801 bp)

>ABC08641 1801
GCCGCATTCGCAGCCCGCTTTCGTCGCCGCCATCACCACACCTCCTCAACCTCCTCTCAT
GGTGATTGCCCCCCGAGCCGCACGCCCCAAGCACCCCTAACCCTAGATCCCGCCACCACT
CACCCCCGCACGCGCACTCTCACTCCCCCACTCTGCCTGCCTGTCACCATGGAGGCCGGG
AGCAGCAAGGCCAGGCTGGCTGTGGCGTGCGCGATCGGCGGGATCGTGCTGGGCGCGGCC
GTCGTGGCGCTCCACGTCGCCGGGCCCGTGGCCGTCCCGGGGCTTCCCCCGCTCGACGCG
CTGCGGCGCCGGTTCCGCCGCCGCCGCCGCCCCGTGCGCGTCTACATGGACGGCTGCTTC
GACATGATGCACTACGGCCACTGCAACGCGCTGCGCCAGGCGCGCGCGCTCGGCGACCAG
CTCATCGTCGGCGTCGTCAGCGACGACGAGATCACCGCCAACAAGGGGCCGCCCGTCACG
CCGCTCAACGAGAGAATGGTGATGGTGGGTGCAGTGAAATGGGTGGATGATGTTATTCCA
GATGCGCCATATGCCATAACTGAAGACTTCATGAACAAGCTATTCACCGAGTATAATATA
GATTACATCATCCATGGCGACGATCCTTGCCTGCTCCCAGATGGCACCGACGCATATGCC
CTTGCCAAAAATGCTGGCAGATATAAGCAGATTAAAAGAACTGAGGGAGTGTCAACAACA
GACATTGTCGGAAGAATGCTTCTTTGTGTTAGAGAGAGATCAGTTTCTGATAGGCACAAC
CACTCTTCACTACAGAGGCAGTTCAGTTCTGGGCATGGTCAGAAGATTGACGATAGTGGG
TCTGGAAGTGGAACTAGAATATCTCATTTTCTTCCTACATCTAGGCGGATAGTTCAGTTC
TCAAATAGCAGGGGTCCAGGACCAGATTCTCGGATAGTTTACATCGATGGTGCATTTGAT
CTGTTCCATGCTGGTCATGTTGAGATATTGCGACTTGCTCGAGGGCTTGGAGATTTCTTG
CTTGTTGGTATTCACACGGATCAGACAATAAGTTCTACACGAGGACCACATCGCCCAATC
ATGAATCTTCATGAGCGAAGTTTGAGTGTCCTAGCCTGCCGTTATGTTGATGAAGTAATA
ATTGGTGCTCCATGGGACATTTCAAAAGACATGATTACAACATTTAATATTTCATTAGTC
GTTCAAGGAACAATTGCTGAGAACATGGATTTTGCGAAGGATGAGTCACATCCATACGCT
GTCCCAATGGATATGGGCATTTTCCACAGATTGGAGAGTCCTTTGGATATCACTACTAGC
ACTATTATAAGGAGGATAGTTTCTAACCATGAAGCCTACCAGAAGCGGAATGAGAAGAAG
GAAGCCAGTGAGAAGAAGTACTACGAGAGTAAAAACTTCGTCAATGGAGAGTAGTTTGTG
AACATACGTTTTGAGATACTAACACCCCGTCACAAATGCAACCAACCATCAGGTGTTCCA
CATGTTTATTGTTTCATGTTATCTTTGTCATGTTGATGATACAGGCTTAGGTAGCTTGTG
ATGAAACCTCGCCTAGTGAGATCCAGGCAGTAGTGGTGATTTTAGGTGAGGATGCTGGAG
GGGGAAGGTGTTTCCTCCATTCACTTCCAGTCTCCATCTTCCCTGTCTAGGGCCCCTGTT
TATGGTCCTTCGCTGCTCAAGTTTTAGTTGTGACCTATAGTTTCATAACTCTGGTACAGT
ATGAATGTTAGGTTGAATAACTACTTGCAGTTGATGCTTTATTTAAAAAAAAAAAAAAAA
A

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354845	1845	0.0	17 - 1800	99	1781 / 1784	None	ABC08641 ABC13814
MLOC_57124.1	1566	0.0	33 - 1393	100	1361 / 1361	None	ABC08641 ABC13814
MLOC_61314.1	1877	0.0	338 - 1570	88	1090 / 1236	CUST_32149_PI390587928	ABC08641 ABC13814
MLOC_61314.3	1478	0.0	262 - 1420	88	1020 / 1162	CUST_32149_PI390587928	ABC08641 ABC13814
MLOC_61314.2	2906	2e-63	2340 - 2538	89	177 / 199	CUST_32149_PI390587928 CUST_24437_PI390587928	ABC08641 ABC13814
MLOC_59651.1	1124	0.0	454 - 879	100	426 / 426	CUST_18298_PI390587928	ABC08641
MLOC_61314.4	1506	1e-179	741 - 1268	88	467 / 529	None	ABC08641 ABC13814
MLOC_61314.5	642	2e-178	1 - 523	88	462 / 523	None	ABC08641 ABC13814