barSeed - Barley Seed Development Database

Probe CUST_24437_PI390587928

Source Contig U35_6192

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24437_PI390587928	Hv_44K_v2	CGAGAATTGTGGTACAATATGAATGCTAGGTCAATCAATTGTTTGTTTCCCGGTTAAAAA	931	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.732	1.673	1.169	0.758	0.290	0.360
Raw	1448.617	2132.477	1331.148	1387.526	182.864	247.631

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61314.2	2906	9e-22	2839 - 2893	100	55 / 55	plus	ABC08641 ABC13814
JLOC1	JLOC1_40061.4	1374	5e-22	1288 - 1342	100	55 / 55	plus
JLOC1	JLOC1_40061.1	1961	5e-22	1875 - 1929	100	55 / 55	plus
Harvest21	ABC13814	999	3e-25	9 - 68	100	60 / 60	minus	ABC13814
Harvest35	U35_6192	999	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (999 bp)

>U35_6192 999 Hv_44K_v2
GGTCATGGGCATGGTCAGAATATTGATGATAGTGGATTTGGAAGTGGAACAAAAATATCT
CATTTTCTTCCACATCTCGGCGGATAGTTCAGTTCTCAAATGGCAGGGGTCCAGGACCAA
ATTCCCGGGTAGTGTACATAGATGGTGCATTTGATCTGTTCCATGCTGGTCATGTCGAGA
TACTGCGACTTGCTCGAGGGCTTGGAGATTTCTTGCTTGTGGGCATTCACACAGATCAGA
CCATAAGTTCAACTCGAGGACCACATCGCCCAATCATGAATCTCCATGAGCGCAGTTTGA
GTGTTTTGGCTTGCCGTTATGTTGACGAAGTGATCATTGGTGCTCCCTGGCACATTTCGA
AAGACATGGTTACCACTTTTAATATTTCATTGGTTGTTCATGGGACTATAGCTGAGAACA
TGGACTATACAGAGGATGATTCAAATCCATATGCTGTTCCAGTTGCTATGGGCATTTATC
ATAAGCTGGAGAGCCCTTTGGACATCACCACTAGTACTATTATAAGGAGGATAGTTTCTA
ACCATGAAGCCTATCAGAAGCGGAACGAGAAGAAGGAAGCCAGTGAGAAGAAGTACTACG
ACAGTAAAAGCTTTGTCAATGGAGAGTAGTTACCTATGGATAGATCTTCTCAGAAGACTG
TTCCTAGATCTTCGAGGCTCTAACACAGGTCACAAATGAAGCCATTAGGTGATCTACAGT
TTTACCGCTCCATTGTCATTTTTGCTATATAGCTTAGTAGCTTCAGATGCAATCTTGATG
CATGATAGGCAGTGGCGCTGAGTTGGGTGCGGAACCTGGATGAATTTCCAATGCCCACTT
CCAGTGCTAGTACCTACCCTATTCCCACCCTGTATACCGGCTTCCAGAGCTGCCGTTACC
GGCTGAGTTCTTTTTGAGATCTATAGTTGTTCGAGAATTGTGGTACAATATGAATGCTAG
GTCAATCAATTGTTTGTTTCCCGGTTAAAAAAAAAAAAA

Homology of Contig U35_6192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g02820.1	425	1e-108	protein\|cytidylyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi4g26020.1	426	3e-114
Arabidopsis v10	AT2G38670.1	421	1e-94	\| Symbols: PECT1 \| phosphorylethanolamine cytidylyltransferase 1 \| chr2:16168979-16171680 FORWARD LENGTH=421