barSeed - Barley Seed Development Database

Probe ABC08560

Source Contig ABC08560

barSeed

Links

Affymetrix Source Sequence (2048 bp)

>ABC08560 2048
CAGGGGTGCATGCACAGAGATATCAAGAAATAAGTAAGCAAAGGCTTGATCGAGCTATTC
TTATCTTTGTTCAAAATTTCAGAAGGTCATATGTAGGGGACCAAGCCATGCATGCTTCAA
AGCAGTTGTATGCAAGATTATCTGAGCTTCTTGGGCTGACTGACCATTTAGTTTTACTCA
ACGTCATTGTTGGGAAGATAGCTACAAATCTGAAGTGCTATGCTGAGTGCGAAGATGTTA
TTGATCATACTCTGTCACTGTTCCAGGAGCTTGCATCTGGCTATATGACTGGAAAGCTTC
TTCTCAAGCTGGAGAGTACAAAGTTCATTATCGCAAATCATTCTCGGGAAAATTTTCCCT
TTCTTGAAGAATACAGATGTGTCCGCAGTAGAACTAACTTCTATTACATCCTTGGCTGCT
TGGTCTTCATGGAGGATGGCCCAGTAAAATTCCGAAGTTTCATGGAGCCACTTCTGCAGG
TTGCAGTTAATTTGGAGGCAAGTGCTGATGCTGCTTTCCAGACTGATGTTGTAAAGTACG
CATTTACTGGTTTGATGAGAGATCTAAGAGGCATTGCTATGGCTACAAACAGCCGCAGGA
CTTACGGCCTCCTATTTGACTGGTTGTATCCGTCTCGCATGCCTCTTCTGTTGAGAGCCA
TCTCCCTGCTGACCGATGAACCAGAGGTTACCACACCCTTACTCAAGTTCATGTCCGAGT
TTGTTTTGAATAAGGCTCAACGATTGACATTTGATTCCTCATCACCAAATGGGATCCTTC
TGTTTCGGGAGATTAGTAAGCTGATTGTGGCTTATGGTTCACGGATTTTATTGCTTCCAA
ATGGCACTAATATTTATAGAAGTAAATACAAAGGCATATGGATTTCATTGACTGTTCTTT
CAAGGGCCCTATGTGGGAACTATGTCAACTTTGGTGTGTTTGAGCTTTACGGTGACAGAG
CACTCGCGGATGCCCTTGATATATCTTTAAAGATGACCCTGTCAATTCCATTGTCTGATA
TATTGACATTTAAAAAGCTATCAAAAGCATATTATGGATATATGGAAGTTCTTTTCAACA
ACCATATCACTATCAATTCTGTCCTCAATCTGGACACAAGTACATTTGTGCATATTGTCA
CCTCGCTTGAATCTGGCTTGAAAGGATTAGATACGGGAATATCAACACAGTGTGCTTCTG
CCATTGATAGCTTGGCAGCTTTCTATTTTAACAATATAACAGCTGGTGATAATCCACCAT
CACCAGCTGCACTGAATCTTGCTCGACATATTGGGGAGCTCCCCAGTTTGTTTCCTCAGA
TACTGAAGTCACTTTTTGAAATCATTATCTTCGAGGACGCGGGTAACCAGTGGAGTCTCA
GTAGACCAATACTTAGTTTGATAATGATCAGTGAACAGATGTTTAGTGATCTGAGAGCGC
AGATATTAGCCTCACAGCCTGTAGATCAGCAACAACGCCTCTCACAGTGTTTCGATAAGC
TCATGACTGATGTCACAAGGAGCTTGGAACCAAAGAACAGAGACAGATTCACTCAAAATC
TCACAACATTCAGACATGATTTCCGAGCGAAGTGACAGTCGATCAGGATTACTTGCAAGT
TTGAAGGAGGCGCTTCTGCATTGCTGTAAATACCAACTTGTTTGCATCATAGGAATCACC
ATTAGTTGAAAAAAAAACTTGTGCTAAAAAAACGCAGTTTAGTTTGCATTGGCTGAAAGA
TGTAGGGCTTTGTCGCTGCATGCTGTGGTGAAAAGCAGTTATAAGTCTCTTAGCTTGTTG
TCCGTATCAGAATGGTGAATGATGGGGATTGACTTGTTTTACCACTGCGTCCCTTTGCTT
GTACAGCAACATTCATCGTGATTGCTGTTACCCCAAGTTGTTAGGGGGACAACAGGCATC
ACTTGCTTAATTCATTGGTTAAAAAGTTAGAATGGAAATGATGTAAATGGCCATGTTGGC
TTGCTAAAATGTGGATTTGGTAGTCTGAGAGAGAGGGGAAATCTTGCCCCATGTACATCA
ATACCGTC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355595	2317	0.0	282 - 2317	99	2036 / 2039	CUST_29243_PI390587928 CUST_39042_PI390587928	ABC08560 ABC42204
MLOC_54154.3	2939	0.0	1 - 1041	99	1040 / 1041	CUST_39042_PI390587928	ABC08560
MLOC_54154.4	3319	0.0	1 - 1038	99	1037 / 1041	CUST_39042_PI390587928	ABC08560
MLOC_54154.5	3316	0.0	1 - 1038	99	1037 / 1041	CUST_39042_PI390587928	ABC08560
MLOC_54154.6	3409	0.0	1 - 1038	99	1037 / 1041	CUST_39042_PI390587928	ABC08560
MLOC_54154.8	3171	0.0	1 - 1025	100	1025 / 1025	CUST_39042_PI390587928	ABC08560
MLOC_54154.10	1280	0.0	1 - 1024	100	1024 / 1024	CUST_39042_PI390587928	ABC08560
MLOC_54154.9	2949	0.0	1 - 1022	99	1022 / 1025	CUST_39042_PI390587928	ABC08560
MLOC_54154.11	3268	0.0	1 - 993	100	993 / 993	CUST_39042_PI390587928	ABC08560
MLOC_54154.12	2866	0.0	1 - 966	99	966 / 969	CUST_39042_PI390587928	ABC08560
MLOC_38751.1	1257	0.0	1 - 923	100	923 / 923	CUST_29243_PI390587928	ABC08560 ABC42204
MLOC_54154.1	3305	4e-145	847 - 1126	100	280 / 280	CUST_39042_PI390587928	ABC08560
MLOC_54154.2	3909	4e-145	847 - 1126	100	280 / 280	CUST_39042_PI390587928	ABC08560
MLOC_54154.13	2900	0.0	1 - 715	100	715 / 715	CUST_39042_PI390587928	ABC08560
MLOC_54154.14	1968	0.0	1 - 628	99	628 / 631	CUST_39042_PI390587928	ABC08560
MLOC_54154.7	1352	6e-139	926 - 1202	99	277 / 280	None	ABC08560