barSeed - Barley Seed Development Database

Probe CUST_29243_PI390587928

Source Contig U35_17915

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29243_PI390587928	Hv_44K_v2	TTGCTTGTACAGCAACATTCATCGTGATTGCTGTTACCCCAAGTTGTTAGGGGGACAACA	1854	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.097	1.329	1.419	1.365	0.591	0.662
Raw	1556.490	2995.366	2753.370	4204.927	622.765	765.794

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355595	2317	2e-24	2133 - 2192	100	60 / 60	plus	ABC08560 ABC42204
MLOC	MLOC_38751.1	1257	2e-24	45 - 104	100	60 / 60	minus	ABC08560 ABC42204
JLOC1	JLOC1_25222.2	1332	8e-25	937 - 996	100	60 / 60	plus
Harvest21	ABC42204	466	3e-25	68 - 127	100	60 / 60	minus	ABC42204
Harvest21	ABC08560	2048	3e-25	1855 - 1914	100	60 / 60	plus	ABC08560
Harvest35	U35_17915	2056	3e-25	1855 - 1914	100	60 / 60	plus

Contig Sequence (2056 bp)

>U35_17915 2056 Hv_44K_v2
CAGGGGTGCATGCACAGAGATATCAAGAAATAAGTAAGCAAAGGCTTGATCGAGCTATTC
TTATCTTTGTTCAAAATTTCAGAAGGTCATATGTAGGGGACCAAGCCATGCATGCTTCAA
AGCAGTTGTATGCAAGATTATCTGAGCTTCTTGGGCTGACTGACCATTTAGTTTTACTCA
ACGTCATTGTTGGGAAGATAGCTACAAATCTGAAGTGCTATGCTGAGTGCGAAGATGTTA
TTGATCATACTCTGTCACTGTTCCAGGAGCTTGCATCTGGCTATATGACTGGAAAGCTTC
TTCTCAAGCTGGAGAGTACAAAGTTCATTATCGCAAATCATTCTCGGGAAAATTTTCCCT
TTCTTGAAGAATACAGATGTGTCCGCAGTAGAACTAACTTCTATTACATCCTTGGCTGCT
TGGTCTTCATGGAGGATGGCCCAGTAAAATTCCGAAGTTTCATGGAGCCACTTCTGCAGG
TTGCAGTTAATTTGGAGGCAAGTGCTGATGCTGCTTTCCAGACTGATGTTGTAAAGTACG
CATTTACTGGTTTGATGAGAGATCTAAGAGGCATTGCTATGGCTACAAACAGCCGCAGGA
CTTACGGCCTCCTATTTGACTGGTTGTATCCGTCTCGCATGCCTCTTCTGTTGAGAGCCA
TCTCCCTGCTGACCGATGAACCAGAGGTTACCACACCCTTACTCAAGTTCATGTCCGAGT
TTGTTTTGAATAAGGCTCAACGATTGACATTTGATTCCTCATCACCAAATGGGATCCTTC
TGTTTCGGGAGATTAGTAAGCTGATTGTGGCTTATGGTTCACGGATTTTATTGCTTCCAA
ATGGCACTAATATTTATAGAAGTAAATACAAAGGCATATGGATTTCATTGACTGTTCTTT
CAAGGGCCCTATGTGGGAACTATGTCAACTTTGGTGTGTTTGAGCTTTACGGTGACAGAG
CACTCGCGGATGCCCTTGATATATCTTTAAAGATGACCCTGTCAATTCCATTGTCTGATA
TATTGACATTTAAAAAGCTATCAAAAGCATATTATGGATATATGGAAGTTCTTTTCAACA
ACCATATCACTATCAATTCTGTCCTCAATCTGGACACAAGTACATTTGTGCATATTGTCA
CCTCGCTTGAATCTGGCTTGAAAGGATTAGATACGGGAATATCAACACAGTGTGCTTCTG
CCATTGATAGCTTGGCAGCTTTCTATTTTAACAATATAACAGCTGGTGATAATCCACCAT
CACCAGCTGCACTGAATCTTGCTCGACATATTGGGGAGCTCCCCAGTTTGTTTCCTCAGA
TACTGAAGTCACTTTTTGAAATCATTATCTTCGAGGACGCGGGTAACCAGTGGAGTCTCA
GTAGACCAATACTTAGTTTGATAATGATCAGTGAACAGATGTTTAGTGATCTGAGAGCGC
AGATATTAGCCTCACAGCCTGTAGATCAGCAACAACGCCTCTCACAGTGTTTCGATAAGC
TCATGACTGATGTCACAAGGAGCTTGGAACCAAAGAACAGAGACAGATTCACTCAAAATC
TCACAACATTCAGACATGATTTCCGAGCGAAGTGACAGTCGATCAGGATTACTTGCAAGT
TTGAAGGAGGCGCTTCTGCATTGCTGTAAATACCAACTTGTTTGCATCATAGGAATCACC
ATTAGTTGAAAAAAAAACTTGTGCTAAAAAAACGCAGTTTAGTTTGCATTGGCTGAAAGA
TGTAGGGCTTTGTCGCTGCATGCTGTGGTGAAAAGCAGTTATAAGTCTCTTAGCTTGTTG
TCCGTATCAGAATGGTGAATGATGGGGATTGACTTGTTTTACCACTGCGTCCCTTTGCTT
GTACAGCAACATTCATCGTGATTGCTGTTACCCCAAGTTGTTAGGGGGACAACAGGCATC
ACTTGCTTAATTCATTGGTTAAAAAGTTAGAATGGAAATGATGTAAATGGCCATGTTGGC
TTGCTAAAATGTGGATTTGGTAGTCTGAGAGAGAGGGGAAATCTTGCCCCATGTACATCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_17915 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g42050.1	1061	protein\|exportin-7-A, putative, expressed
Brachypodium v1_2	Bradi1g34100.1	1058
Arabidopsis v10	AT5G06120.1	1066	ARM repeat superfamily protein \| chr5:1844797-1852601 FORWARD LENGTH=1066