barSeed - Barley Seed Development Database

Probe ABC08470

Source Contig ABC08470

barSeed

Links

Affymetrix Source Sequence (1793 bp)

>ABC08470 1793
GCAGGGATCCCCGCTTATTCCCCGGGCCAGAACAACCCATCCAAGCTCCTGTCCGTTCCG
GCGACGGCGACGGCGACGGGCCGGCGGTTGCCTTCCTCCTCCTCCGTCGGCCAAGATCCA
CATCACCGCATCCTCCTCTTCTTTCATGTACTCGTCACATCACCGATCTCACACGCAATG
GATGGGCAAAGCAGAAAGCACAGGATTTTGATGGTGTCTGACTTTTTCTTCCCAAACTTT
GGCGGTGTGGAAAGCCACATCTATTATCTATCGCAGTGCCTCCTTAAGCTTGGCCATAAG
GTTGTTGTCATGACACATGCATATGGAAAACGTTCTGGAGTACGATATGTTACTGGTGGC
TTGAAGGTTTATTATGTGCCGTGGAGGCCATTCCTGATGCAGAATACACTACCTACATTA
TTCATGACATTTCCAATCATAAGGACCATTCTTATTCGTGAGAGGATATCTGTTGTGCAT
GGACATCAGGCCTTTTCAACACTGTGCCACGAAGCGTTGATGCATGCTAGGACGATGGGG
TACAAAGTTGTCTTCACAGACCACTCGCTTTATGGTTTTGCTGATGTTGGGAGCATTCAC
ATGAATAAGGTGCTGCAGTTTACTCTTGCAGATATTGATCAGGCCATATGTGTGTCTCAC
ACAAGCAAAGAGAACACTGTCTTGAGGTCAGGGATATCCCCGGACAAAGTTTTCATGGTT
CCTAATGCAGTGGATACTGCAATGTTTACTCCCTCCAACCGCTTAAGCTGTGATGAAATC
ATTATTGTTGTGATAAGTAGATTGGTATATCGAAAAGGTGCTGACCTTCTTGTTGAAGTC
ATTCCAGAAGTATGCCGTCTATTTCCAAAGGTTCGCTTTATTGTTGGAGGTGATGGTCCA
AAACGAGTGCGACTTGAAGAGATGAGAGAGAAGTTCTCCCTTCAGGATAGAGTTGAGATG
TTAGGGGCTGTACCTCATGCTCAAGTACGATCTGTTCTGATATCTGGTCATATATTTCTT
AACAGTTCGCTTACAGAAGCATTTTGCATAGCCATTCTGGAAGCAGCAAGCTGTGGGCTT
TTGACTGTAAGCACTAGAGTCGGAGGGGTTCCAGAGGTTCTACCAGATGACATGATAGTA
CTTGCAGAACCAGATCCAGAAGATATGGTACGGGCTGTCAGGCAAGCTATCGACATACTG
CCTGGTATAGATCCCCAAATTATGCATCGCCGGATGAAAAAACTCTATAGTTGGGATGAT
GTTGCGAAAAGAACGGAGATCGTCTACGATCGTGCAATGCAGTCATCAAACACTAATTTG
CTAGATCATCTTCCCCGATACCTCACATGTGGAGCTTGGGCAGGCAAGCTGTTTTGCCTC
GTTATGATCATAAATTACCTTGCGTGGTGCCTTCTAGAATTCCTGCAGCCTGCTGAAGGT
ATTGAAGAAGTCCCGGATATAGGGTCACTACACATTCATTCGGATTCAGTAGATGACCAG
TGGAAGCGCAAGGAAATTGAACTGTTTTGCAACCATTGTGGCATGGATCATGTAGGAGGT
CGTGATGCCTAGTTTGGGCTAGCTGGCTCCCACTCTGGAATTTCTTTCGGTGTTTCCTGG
TCCTGCAGTGACTGCTTTGAGAACAGATCTTTGGCGAACCAGATAATTATGAAATCATTT
CCTCGCACCAAATACTGGAATTTACAGTCGTGTTGCATAAAGCTAATGGTGTGAGTTGTA
ATGCCATTGCCAACTTTCTGAGGTGTCTTTTATGCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251772.1	1834	0.0	185 - 1798	99	1613 / 1614	CUST_1385_PI390587928 CUST_29179_PI390587928 CUST_29180_PI390587928	ABC08470 ABC08472 ABC37012
AK368062	1872	0.0	2 - 1641	95	1569 / 1655	CUST_1385_PI390587928 CUST_29179_PI390587928 CUST_29178_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_67626.1	1602	0.0	232 - 1602	96	1324 / 1375	CUST_1385_PI390587928 CUST_29179_PI390587928 CUST_29178_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_67626.2	1481	1e-120	1246 - 1481	100	236 / 236	CUST_1385_PI390587928 CUST_29178_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_67626.3	1107	4e-120	873 - 1107	100	235 / 235	CUST_1385_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_72888.1	847	0.0	35 - 789	99	754 / 755	CUST_29180_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_72888.3	920	0.0	1 - 721	99	720 / 721	None	ABC08470 ABC08472 ABC37012
MLOC_72888.5	817	0.0	1 - 715	99	714 / 715	None	ABC08470 ABC08472 ABC37012
MLOC_72888.7	612	0.0	1 - 575	99	574 / 575	None	ABC08470 ABC08472 ABC37012
MLOC_72888.2	1109	5e-164	738 - 1051	100	314 / 314	CUST_29177_PI390587928 CUST_29180_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_72888.4	1151	3e-96	670 - 861	100	192 / 192	CUST_29177_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_72888.6	1087	5e-164	648 - 961	100	314 / 314	CUST_29177_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_72888.8	957	2e-113	641 - 863	100	223 / 223	CUST_29177_PI390587928	ABC08470 ABC08472 ABC37012
MLOC_993.2	820	8e-157	400 - 700	100	301 / 301	None	ABC08470
MLOC_45759.1	289	4e-150	1 - 289	100	289 / 289	None	ABC08470
MLOC_995.2	929	2e-133	671 - 929	100	259 / 259	None	ABC08470
MLOC_993.3	770	4e-55	400 - 521	99	121 / 122	None	ABC08470
MLOC_993.1	366	3e-66	70 - 207	100	138 / 138	None	ABC08470
MLOC_31523.1	869	3e-61	522 - 659	98	135 / 138	None	ABC08470
MLOC_995.1	879	4e-55	671 - 792	99	121 / 122	None	ABC08470