barSeed - Barley Seed Development Database

Probe CUST_29179_PI390587928

Source Contig U35_17952

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29179_PI390587928	Hv_44K_v2	TGAATAAGGTGCTGCAGTTTACTCTTGCAGATATTGATCAGGCCATATGTGTGTCTCACA	576	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.963	0.800	1.305	1.309	0.954	0.944
Raw	22.131	25.551	40.684	62.588	16.767	17.758

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368062	1872	2e-24	569 - 628	100	60 / 60	plus	ABC08470 ABC08472 ABC37012
MLOC	AK251772.1	1834	2e-24	622 - 681	100	60 / 60	plus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_67626.1	1602	2e-24	1245 - 1304	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
Harvest21	ABC08471	639	3e-25	577 - 636	100	60 / 60	plus
Harvest21	ABC08470	1793	3e-25	602 - 661	100	60 / 60	plus	ABC08470
Harvest35	U35_17952	639	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_17951	1793	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_17952 639 Hv_44K_v2
GAACCCATCCAAGCTCCTGTCCGCTCCGGCTCCGGTGACGGCGACGGGCCGGCGGTTGCT
TTCGTCCTCCTTCGTCGACCAAGATCCACCAACGCAAACACCGCATCCTCCTCTTCTTTC
AGGTACTCGTCACATCACCGATCTCACACGCAATGGATGGGCAAAGCAGAAAGCACAGGA
TTTTGATGGTGTCCGACTTTTTCTTCCCAAACTTTGGCGGTGTGGAAAGCCACATCTATT
ATCTATCGCAATGCCTCCTTAAGCTTGGTCATAAGGTGGTTGTCATGACACATGCATATG
GAAAACGTTCTGGAGTACGATATGTTACTGGTGGCTTGAAGGTTTATTATGTGCCGTGGA
GGCCATTCCTGATGCAGAATACGCTACCTACATTATTCATGACATTTCCAATCATAAGGA
CCATTCTTATTCGTGAGAGGATATCTGTTGTGCATGGACATCAGGCCTTTTCAACACTGT
GCCACGAAGCGTTGATGCATGCTAGGACGATGGGGTACAAAGTTGTCTTCACAGACCACT
CGCTNTATGGTTTTGCTGATGTTGGGAGCATTCACATGAATAAGGTGCTGCAGTTTACTC
TTGCAGATATTGATCAGGCCATATGTGTGTCTCACACAA

Homology of Contig U35_17952 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16960.1	472	8e-109	protein\|glycosyl transferase, group 1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g32610.1	449	2e-110
Arabidopsis v10	AT3G45100.1	447	5e-98	\| Symbols: SETH2 \| UDP-Glycosyltransferase superfamily protein \| chr3:16504648-16506858 FORWARD LENGTH=447