barSeed - Barley Seed Development Database

Probe ABC08031

Source Contig ABC08031

barSeed

Links

Affymetrix Source Sequence (1560 bp)

>ABC08031 1560
GACGAGGCCCATCCAGTCTTCGGTTCTTCGCTCCTCGCCAACCTCAACCTGCCATGGCCT
CCACCGTGGCCTTCACCCCCGCCGTCGCCGTCGCCGTCGTCGGCGCCAATGTGCAGCACG
CTCGGAGGACCTCTTCGCTGCGGCCCGTCCCGAGAGCCAGGCCCGTGGCTGCGAGGGCCA
GCGCCGAGAGGGACGGCGCCGCGGCGGTCGTCCAGGCGCGGTCGGGGAGGACCATCGAGG
AGTGCGAGGCGGACGCCGTCGCCGGGAAGTTCCCCGCCGCGCCGCCGCCGACCAGGCCGC
AGGCCCCCAGCGGCACCCCGGAGATCAGGCCCCTCGACATGGCGAAGCGCCCTCGCCGGA
ACCGGAGGTCGCCGGCGCTCCGGGCAGCGTTCCAGGAGACCAGCATTACCCCCGCGAACC
TCGTCCTCCCCCTGTTCATCCATGAAGGTGAAGAAGACACTCCCATTGGAGCTATGCCTG
GGTGCTTCAGGCTTGGATGGAGGCACGGGCTTCTGGAAGAGGTTTACAAGTCACGGGATG
TTGGTGTTAACAGCTTTGTGCTATTCCCAAAGGTTCCTGATGGATTAAAGACTCAAACAG
GAGATGAGGCATATAATGATAATGGTTTAGTGCCTCGAACAATCCGTTTGCTCAAGGATA
AATACCCTGACATTGTTATCTACACTGATGTTGCTTTGGATCCATATTCTTCTGATGGTC
ATGATGGCATTGTGAGAGAAGATGGAGTCATCATGAACGATGAAACAGTTCATCAGCTGT
GCAAGCAGGCAGTTTCCCAGGCTCGAGCTGGTGCTGATGTTGTCAGTCCTAGTGACATGA
TGGATGGTCGTGTTGGGGCGATTCGGGCTGCATTAGATGCATAGGGTTTCCATGATGTCT
CCATCATGTCCTACACTGCAAAGTATGCTAGTTCGTTTTATGGTCCATTCCGTGAAGCTT
TGGATTCAAATCCACGATTTGGAGACAAGAAGACTTATCAGATGAACCCAGCCAACTACA
GAGAAGCCCTTATAGAAACTGCAGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGGTGA
AACCCGGATTACCATACCTTGATATTATCCGACTTCTACGGGATAATTCAGCCTTGCCAA
TTGCTGCATACCAGGTGTCAGGCGAGTACTCGATGATCAAGGCCGGCGGCGTGCTGAAGA
TGGTGGACGAGGAGAAGGTGATGATGGAGTCGCTGCTGTGCCTCCGGCGCGCCGGCGCCG
ACATCATCCTCACCTACTTCGCCCGCCAGGCCGCCAACGTCCTCTGCGGCACCAAGCGGC
CGTAGCTCATCACGGAAGTCAGTTTCTTGTAGTGGTACCATGGCCATGGCGTATCACTGC
ATTGCAGAGCGTGGAGGCTTATCCAGTGGTGCGGCGCGGCCATGCTCTCCGGTAGATGGA
GGTTTATTACTGGCTTCGGTTCGGTGTAATTAACGAGGCTTTGTCCTGAGTACATTATTT
TCACTCAGTTTTAGACAGTTATTAATCGACTAACTGATTTTTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354465	1535	0.0	14 - 1535	99	1520 / 1522	CUST_11733_PI390587928	ABC04951 ABC08031 ABC49857
MLOC_49894.2	1323	0.0	61 - 1267	99	1205 / 1207	CUST_11733_PI390587928	ABC04951 ABC08031 ABC49857
MLOC_49894.1	894	0.0	74 - 894	99	817 / 821	None	ABC04951 ABC08031
MLOC_74261.5	1716	0.0	460 - 1556	86	946 / 1098	CUST_15795_PI390587928	ABC04951 ABC08031
MLOC_74261.2	1659	0.0	322 - 1418	86	946 / 1098	CUST_36207_PI390587928 CUST_15795_PI390587928	ABC04951 ABC08031
MLOC_74261.3	1699	0.0	471 - 1569	86	946 / 1100	CUST_15795_PI390587928	ABC04951 ABC08031
AK355789	2493	0.0	163 - 776	93	568 / 614	None	ABC08031 ABC16559
MLOC_74261.1	1292	0.0	636 - 1290	86	565 / 656	None	ABC04951 ABC08031
MLOC_74261.4	1531	0.0	1020 - 1530	89	456 / 511	CUST_15795_PI390587928	ABC04951 ABC08031
MLOC_4920.3	645	3e-91	460 - 645	99	185 / 186	None	ABC08031 ABC13153
MLOC_4920.4	341	5e-89	160 - 338	100	179 / 179	None	ABC08031
MLOC_49958.1	271	2e-82	5 - 192	96	181 / 188	None	ABC08031
MLOC_49958.2	346	3e-81	5 - 190	96	179 / 186	None	ABC08031
MLOC_33237.1	447	5e-64	192 - 350	95	151 / 159	None	ABC08031
MLOC_33237.2	1280	3e-56	3 - 140	96	132 / 138	None	ABC08031 ABC15016