barSeed - Barley Seed Development Database

Probe ABC07898

Source Contig ABC07898

barSeed

Links

Affymetrix Source Sequence (978 bp)

>ABC07898 978
GCCCTCTGCCGATTCGCCGAGTCAAGGCGTCCTCCGTCTGTTCCCGATCTGGGCGACGTG
CCTGATCTACGCCGTGGCCTTCTCCCAGTCGTCCACCTTCTTCACGAAGCAGGCGGCGAC
CCTCGACCGGCACGTGGGCAAGCGGCTCCAGGTGCCACCGGCGGCGCTCCAGAGCTTCAT
CAGCATCACCATCGTAATCTTCATGCCCATCTACGACCGCGCCATCGTGCCGCTGGCGCG
GCGCTGCACCGGCGTCCCCTCCGGCATCACCATGCTGCAGCGCATCGGCGTCGGGATGGT
GCTCTCCCTCGTGTCGATGGTGGTCGCGGCGCTCGTGGAGACGCGCCGGCTCCGAATCGC
GACGGACGCCGGCCTGGCAGACCTGCCCAAGGTGCCGGTGCCGATGAGCCTGTGGTGGAT
GGTGCCGCAGTACGTGCTGTTCGGCGCGGCGGACGTGTTCACCATGGTCGGGCTGCAGGA
GTTCTTCTACGACCAGGTGCCCGACAAGCTGCGCAGCATCGGGCTGGCGCTCTACATCAG
CATCTTCGGCATCGGCAGCTTCATCAGCAGCGGCCTCGTGTCGGGCATCGACAAGTGGAC
GTCGGAGAGGGGGCAGAGCTGGTTCTCCAACAATCTCAACCGCGGCCACCTCGACTACTT
CTACTGGCTCATCGCCGCGCTCAGCGCGCTAGAGCTTCTGGTGTACGTCTTCTTCGCGGT
GACCTTCAGGTACAAGAAGAAGGCAGCAGCACCTACCGTTGGTTAGGACAACATATATAC
TCGTGCTAGGCTAGGAATAGGATAAATACGAATTCAAGGTGTACATGCTTACATTTCCTT
TTCGATGGCTATTCTCCACTTCAAAATGCTACAGGCCCACACAAATGATTTTGATAACAT
TACACACCGGCGCCCCTATCAAGGGAAGAAAATTACAAGTTGGTATCAAAAAAAAAAAAA
AANAAAACTCGAGACTAG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11789.1	1616	0.0	70 - 999	99	928 / 930	CUST_11537_PI390587928	ABC07895 ABC07897 ABC07898
AK355235	2242	0.0	1252 - 2115	99	861 / 864	None	ABC07895 ABC07897 ABC07898
MLOC_56891.2	2859	3e-133	1106 - 1756	80	527 / 658	CUST_11539_PI390587928 CUST_40846_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_56891.4	1838	3e-133	813 - 1463	80	527 / 658	CUST_40846_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_56891.1	3085	3e-133	1549 - 2199	80	527 / 658	CUST_11539_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_56891.5	2056	3e-133	808 - 1458	80	527 / 658	CUST_11539_PI390587928 CUST_40846_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_56891.3	2017	3e-133	937 - 1587	80	527 / 658	CUST_40846_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_71333.4	1708	2e-120	225 - 894	79	532 / 677	CUST_11560_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_71333.2	2165	2e-120	302 - 971	79	532 / 677	CUST_11541_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_71333.1	1731	2e-120	302 - 971	79	532 / 677	CUST_11541_PI390587928 CUST_11560_PI390587928	ABC07895 ABC07897 ABC07898
MLOC_71333.3	2158	1e-118	1260 - 1929	78	531 / 677	CUST_11541_PI390587928 CUST_11560_PI390587928	ABC07895 ABC07897 ABC07898
AK365084	3471	5e-82	2807 - 3325	78	408 / 525	None	ABC07898
MLOC_66856.3	1344	1e-87	248 - 789	78	427 / 549	None	ABC07898
MLOC_66856.1	2167	1e-87	1072 - 1613	78	427 / 549	None	ABC07898
AK372691	1659	5e-87	899 - 1525	76	483 / 632	CUST_26143_PI390587928 CUST_847_PI390587928	ABC07898
MLOC_66142.1	1576	2e-85	711 - 1337	76	482 / 632	CUST_847_PI390587928	ABC07898
MLOC_66142.2	1386	2e-85	635 - 1261	76	482 / 632	CUST_847_PI390587928	ABC07898
AK374743	1219	1e-83	530 - 1048	78	409 / 525	None	ABC07898
MLOC_79133.2	1765	5e-82	115 - 633	78	408 / 525	None	ABC07898